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Influenza A/H3N2
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GS_00JK75U.1
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Download FASTA
Download metadata TSV
USA/GS_00JK75U.1/2026-06-19
M. Kirby,
R. Garten,
T. Davis &
V. Dugan
Centers for Disease Control and Prevention, Influenza Division
Submission details
Submission ID
PZ977391.1.seg1/PZ977392.1.seg2/PZ977393.1.seg3/PZ977394.1.seg4/PZ977395.1.seg5/PZ977396.1.seg6/PZ977397.1.seg7/PZ977398.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-11 08:10:03 UTC
Date released
2026-09-11 08:11:25 UTC
INSDC
bioprojectAccession
PRJNA998880
INSDC accession seg1
PZ977391.1
INSDC accession seg2
PZ977392.1
INSDC accession seg3
PZ977393.1
INSDC accession seg4
PZ977394.1
INSDC accession seg5
PZ977395.1
INSDC accession seg6
PZ977396.1
INSDC accession seg7
PZ977397.1
INSDC accession seg8
PZ977398.1
NCBI release date
2026-09-10
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Utah
Collection date
2026-06-19
Isolate name
A/Utah/60/2026
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2316 (98.9%)
Total SNPs seg1
105
Length seg2
2316 (98.9%)
Total SNPs seg2
108
Length seg3
2208 (98.9%)
Total SNPs seg3
92
Length seg4
1737 (100%)
Total SNPs seg4
121
Length seg5
1541 (98.4%)
Total SNPs seg5
58
Length seg6
1442 (100%)
Total inserted nucs seg6
3
Total SNPs seg6
17
Length seg7
1002 (97.6%)
Total SNPs seg7
26
Length seg8
865 (97.2%)
Total SNPs seg8
34
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
C
54
T
G
57
A
T
75
C
G
87
A
A
147
G
C
192
T
C
198
T
T
255
C
A
282
G
C
289
A
A
336
G
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
T
417
C
Show more
seg2
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
A
179
G
G
180
A
A
213
T
A
219
G
G
258
A
C
306
T
T
327
C
G
336
A
A
342
T
T
362
C
Show more
seg3
G
22
A
G
82
A
A
99
G
A
120
C
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
C
261
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
T
212
C
G
213
A
G
214
A
G
222
A
Show more
seg5
A
16
G
C
29
T
A
40
C
G
81
A
G
96
A
T
180
G
G
207
A
G
219
A
G
237
A
C
249
T
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
Show more
seg6
C
40
T
A
64
G
T
100
C
C
349
A
G
456
A
G
517
A
C
797
A
G
907
A
T
1015
C
A
1044
G
A
1079
G
A
1160
G
G
1206
A
G
1342
A
G
1390
A
A
1410
G
T
1413
C
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
T
589
C
A
637
G
A
658
G
G
680
A
C
697
T
T
703
C
C
787
T
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
T
134
A
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
A
317
G
G
353
A
G
398
A
G
416
A
Show more
Deletions
N/A
Insertions
seg6
ins_1439:ACT
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
141
K
HA1:
R
142
G
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
A
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
A
20
T
PA:
N
142
K
PA:
I
155
M
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
A
20
T
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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