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Influenza A/H3N2
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Influenza B/Victoria
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GS_00JK6G7.1
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Download FASTA
Download metadata TSV
USA/GS_00JK6G7.1/2026-07-03
M. Kirby,
R. Garten,
T. Davis &
V. Dugan
Centers for Disease Control and Prevention, Influenza Division
Submission details
Submission ID
PZ977199.1.seg1/PZ977200.1.seg2/PZ977201.1.seg3/PZ977202.1.seg4/PZ977203.1.seg5/PZ977204.1.seg6/PZ977205.1.seg7/PZ977206.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-09-11 08:10:03 UTC
Date released
2026-09-11 08:11:25 UTC
INSDC
bioprojectAccession
PRJNA998880
INSDC accession seg1
PZ977199.1
INSDC accession seg2
PZ977200.1
INSDC accession seg3
PZ977201.1
INSDC accession seg4
PZ977202.1
INSDC accession seg5
PZ977203.1
INSDC accession seg6
PZ977204.1
INSDC accession seg7
PZ977205.1
INSDC accession seg8
PZ977206.1
NCBI release date
2026-09-10
Clade
Clade HA
J.2.4
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2026-07-03
Isolate name
A/Iowa/58/2026
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2316 (98.9%)
Total SNPs seg1
102
Length seg2
2316 (98.9%)
Total SNPs seg2
115
Length seg3
2208 (98.9%)
Total SNPs seg3
94
Length seg4
1737 (100%)
Total SNPs seg4
125
Length seg5
1541 (98.4%)
Total SNPs seg5
57
Length seg6
1441 (100%)
Total inserted nucs seg6
2
Total SNPs seg6
18
Length seg7
1002 (97.6%)
Total SNPs seg7
25
Length seg8
865 (97.2%)
Total SNPs seg8
32
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
C
54
T
G
57
A
T
75
C
G
87
A
G
165
A
C
192
T
C
198
T
T
255
C
A
282
G
C
289
A
A
330
G
A
336
G
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
Show more
seg2
C
46
T
C
52
T
G
57
A
C
84
A
A
129
G
A
132
T
C
141
T
T
171
C
A
179
G
G
180
A
A
213
T
A
219
G
G
258
A
G
294
A
C
306
T
T
327
C
G
336
A
A
342
C
Show more
seg3
G
22
A
G
57
T
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
Show more
seg4
A
24
G
T
42
A
G
56
T
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
250
G
A
251
G
Show more
seg5
A
16
G
C
29
T
A
40
C
G
96
A
G
207
A
C
216
T
G
219
A
C
249
T
A
345
C
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
G
492
A
A
501
G
Show more
seg6
C
20
A
A
64
G
C
99
T
T
100
C
C
349
A
G
456
A
C
797
A
G
838
A
T
1015
C
G
1021
A
A
1044
G
T
1129
C
A
1160
G
G
1206
A
T
1309
C
C
1330
T
G
1342
A
T
1413
C
seg7
A
37
T
C
188
T
G
205
A
G
208
T
G
214
T
A
241
G
T
292
C
T
298
C
G
328
A
A
466
G
A
481
G
C
493
T
A
517
G
A
637
G
A
658
G
G
680
A
C
697
T
T
703
C
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
T
C
116
T
C
123
A
T
125
C
C
129
A
C
153
T
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
G
398
A
G
416
A
Show more
Deletions
N/A
Insertions
seg6
ins_1439:CT
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
F
79
V
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
N
49
S
HA2:
I
77
V
HA2:
R
121
K
HA2:
K
124
R
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
NA
NA:
Q
5
K
NA:
T
31
I
NA:
R
150
H
NA:
H
264
N
NA:
D
346
G
NA:
N
385
D
NA:
R
400
K
NA:
I
469
T
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
E
421
D
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
V
341
I
PA:
D
382
E
PA:
D
396
E
PA:
I
407
V
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
R
59
K
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
P
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
V
344
I
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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