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Influenza A/H1N1pdm
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Influenza A/H1N1pdm
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Influenza A/H1N1pdm
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GS_00J5Y7U.1
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USA/GS_00J5Y7U.1/2026-07-27
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ891078.1.seg4/PZ891079.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-28 07:39:45 UTC
Date released
2026-08-28 07:39:52 UTC
Clade
Clade HA
unassigned
Clade NA
A.1.1
Sample details
Collection country
USA
Collection subdivision level 1
Oklahoma
Collection date
2026-07-27
Isolate name
A/swine/Oklahoma/A03690833/2026
INSDC
INSDC accession seg4
PZ891078.1
INSDC accession seg6
PZ891079.1
NCBI release date
2026-08-27
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg4
1701 (97.1%)
Total SNPs seg4
105
Length seg6
1410 (98.4%)
Total SNPs seg6
61
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
A
47
G
G
57
A
A
66
G
T
78
C
T
89
G
A
128
G
T
140
C
C
164
T
A
170
T
G
188
A
G
205
A
A
261
G
C
281
T
C
284
T
C
293
A
C
318
T
G
322
A
T
358
C
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seg6
A
23
G
C
43
T
T
44
G
T
46
C
A
57
G
C
64
T
T
134
C
T
146
A
A
159
C
A
161
G
A
203
G
T
205
A
G
207
C
T
224
C
C
229
T
C
232
T
G
246
A
C
250
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
R
45
K
HA1:
N
64
D
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
I
96
T
HA1:
D
97
N
HA1:
P
137
S
HA1:
I
149
V
HA1:
G
155
E
HA1:
S
162
N
HA1:
S
164
T
HA1:
L
176
I
HA1:
S
183
P
HA1:
S
185
T
HA1:
A
186
V
HA1:
A
195
E
HA1:
S
203
T
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HA2
HA2:
I
91
V
HA2:
V
122
I
HA2:
S
124
T
HA2:
D
158
E
HA2:
P
160
S
HA2:
E
172
K
NA
NA:
S
12
L
NA:
I
13
T
NA:
I
17
V
NA:
T
19
M
NA:
K
51
Q
NA:
F
66
Y
NA:
V
67
L
NA:
S
74
F
NA:
A
75
V
NA:
V
80
M
NA:
A
81
G
NA:
I
108
V
NA:
I
149
F
NA:
I
163
V
NA:
L
206
V
NA:
R
220
K
NA:
K
222
D
NA:
D
248
N
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SigPep
SigPep:
A
13
T
SigPep:
N
16
D
Deletions
N/A
Insertions
N/A
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