GenSpectrum
Organisms
Influenza B/Victoria
GenSpectrum
Organisms
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Dengue 2
Dengue 3
Dengue 4
Influenza A
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza B
Influenza B/Victoria
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Influenza B/Victoria
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GS_00J5GDY.1
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USA/GS_00J5GDY.1/2026-07-16
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ863760.1.seg1/PZ863761.1.seg2/PZ863762.1.seg3/PZ863763.1.seg4/PZ863764.1.seg5/PZ863765.1.seg6/PZ863766.1.seg7/PZ863767.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-21 05:01:37 UTC
Date released
2026-08-21 05:02:01 UTC
INSDC
bioprojectAccession
PRJNA967388
biosampleAccession
SAMN62518176
INSDC accession seg1
PZ863760.1
INSDC accession seg2
PZ863761.1
INSDC accession seg3
PZ863762.1
INSDC accession seg4
PZ863763.1
INSDC accession seg5
PZ863764.1
INSDC accession seg6
PZ863765.1
INSDC accession seg7
PZ863766.1
INSDC accession seg8
PZ863767.1
NCBI release date
2026-08-20
Clade
Clade HA
V1A.3a.2
Clade NA
B.8
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-07-16
Isolate name
B/California/LACPHL-INF02814/2026
INSDC seg4
lineage_seg4
vic
Alignment and QC
Length seg1
2263 (97%)
Total SNPs seg1
46
Length seg2
2313 (98.1%)
Total SNPs seg2
54
Length seg3
2181 (97.1%)
Total SNPs seg3
55
Length seg4
1742 (92.8%)
Total ambiguous nucs seg4
1
Total deleted nucs seg4
9
Total SNPs seg4
58
Length seg5
1683 (96.2%)
Total SNPs seg5
32
Length seg6
1406 (100%)
Total inserted nucs seg6
5
Total SNPs seg6
36
Length seg7
1139 (99.3%)
Total SNPs seg7
15
Length seg8
1026 (96.2%)
Total SNPs seg8
21
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg1
C
26
T
C
113
T
G
197
A
A
200
G
A
359
G
G
383
A
C
434
T
T
522
C
A
671
G
C
746
A
A
827
G
C
854
T
T
938
C
A
950
G
T
962
C
T
968
C
T
995
C
G
1064
A
Show more
seg2
G
12
A
G
39
A
A
54
G
G
81
A
T
171
C
T
174
C
T
240
C
T
300
A
T
330
C
C
342
T
A
405
G
G
441
A
G
447
A
G
510
A
C
513
T
A
576
G
A
594
G
A
705
G
Show more
seg3
T
88
C
T
111
C
C
117
T
T
339
C
G
414
A
T
423
C
G
549
A
A
618
G
A
624
G
T
654
C
A
771
G
C
773
A
C
813
T
A
828
G
G
867
A
G
894
A
C
897
T
G
906
A
Show more
seg4
C
188
T
C
252
A
C
270
T
C
276
A
G
297
A
G
312
T
A
318
G
A
351
G
C
375
T
C
378
T
A
427
G
A
435
G
C
441
T
T
444
C
T
456
C
G
457
A
A
462
T
A
484
G
Show more
seg5
T
46
C
A
55
G
A
121
G
C
178
T
A
224
G
A
235
G
G
244
A
T
298
C
C
313
T
G
361
A
A
373
G
C
380
T
A
454
G
C
523
T
T
532
C
C
608
T
A
634
G
G
715
T
Show more
seg6
T
9
C
C
125
A
T
134
C
G
194
A
T
212
C
A
358
G
C
394
T
C
399
T
A
504
G
C
519
T
C
534
T
A
660
C
T
714
A
C
849
T
A
853
G
T
879
C
T
885
G
A
912
G
Show more
seg7
C
33
T
C
46
T
A
83
G
T
113
C
T
125
A
G
316
A
A
419
G
G
482
A
G
500
T
G
521
A
G
536
A
A
566
G
C
656
T
A
919
G
A
967
G
seg8
A
118
G
T
163
C
T
166
C
G
190
A
T
341
C
A
352
C
T
355
C
C
358
A
T
391
C
C
419
T
G
593
A
C
604
T
A
610
T
C
632
T
G
661
A
T
772
C
T
775
C
C
882
T
Show more
Deletions
seg4
562-570
Insertions
seg6
ins_0:GAACA
Amino acid substitutions
Substitutions called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
T
37
I
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
K
203
R
HA1:
P
241
Q
HA1:
R
279
K
M1
M1:
T
15
I
M1:
R
105
K
NA
NA:
P
42
Q
NA:
I
45
T
NA:
R
65
H
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
K
285
E
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
G
346
R
NA:
E
358
K
NA:
D
384
G
NA:
A
395
V
NA:
S
397
K
NA:
V
401
I
NEP
NEP:
V
29
A
NEP:
L
30
S
NEP:
S
93
P
NP
NP:
I
9
M
NP:
T
66
A
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
V
188
M
NS1:
H
201
Y
PA
PA:
I
208
M
PA:
T
258
K
PA:
K
312
R
PA:
T
352
A
PA:
S
530
T
PA:
F
709
I
PA:
N
714
S
PA:
I
723
V
PB1
PB1:
M
65
I
PB1:
V
474
I
PB2
PB2:
X
303
I
PB2:
I
492
T
PB2:
X
582
E
Deletions
HA1
HA1:162-164
Insertions
N/A
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