GS_00J5GC0.1

USA/GS_00J5GC0.1/2026-08-05
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ852433.1.seg1/PZ852434.1.seg2/PZ852432.1.seg3/PZ852427.1.seg4/PZ852430.1.seg5/PZ852429.1.seg6/PZ852428.1.seg7/PZ852431.1.seg8
Submitting group
Date submitted
2026-08-21 05:01:37 UTC
Date released
2026-08-21 05:02:01 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-08-18

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Sample details

Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2026-08-05
Isolate name
B/New Jersey/GKISBBBJ74030/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2356 (100%)
Total inserted nucs seg1
22
Total SNPs seg1
41
Length seg2
2367 (100%)
Total inserted nucs seg2
9
Total SNPs seg2
49
Length seg3
2285 (100%)
Total inserted nucs seg3
40
Total SNPs seg3
52
Length seg4
1849 (98.6%)
Total deleted nucs seg4
9
Total SNPs seg4
55
Length seg5
1817 (100%)
Total inserted nucs seg5
67
Total SNPs seg5
35
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
35
Length seg7
1162 (100%)
Total inserted nucs seg7
15
Total SNPs seg7
22
Length seg8
1066 (99.6%)
Total inserted nucs seg8
4
Total SNPs seg8
24

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • A200G
  • T219C
  • G251A
  • G383A
  • T386C
  • C434T
  • T522C
  • C528A
  • C581A
  • C708T
  • C746A
  • A764G
  • C830T
  • C854T
  • A950G
  • T962C
  • T968C

seg2

  • G12A
  • A54G
  • G81A
  • T171C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G477T
  • C513T
  • A576G
  • T586C
  • A594G
  • A705G
  • G768A

seg3

  • T111C
  • C117T
  • T339C
  • C345T
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A692G
  • A771G
  • C813T
  • G867A
  • G888A
  • C897T
  • A935G
  • G936A
  • A987G

seg4

  • G144A
  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
  • T510C

seg5

  • C3T
  • T46C
  • C178T
  • A224G
  • A235G
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • A724G
  • T742C
  • A763G
  • A829G

seg6

  • T9C
  • C125A
  • C152T
  • T155C
  • T212C
  • C318A
  • A358G
  • C394T
  • C399T
  • C429T
  • A504G
  • C519T
  • A557G
  • A660C
  • T714A
  • C849T
  • T879C
  • T885G

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • A377G
  • T404C
  • A419G
  • G482A
  • G500T
  • T515C
  • G521A
  • A524G
  • G536A
  • C542T
  • A566G
  • C656T
  • G668A
  • A919G

seg8

  • G26A
  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • T391C
  • T400C
  • C419T
  • A426G
  • A486G
  • C487T
  • C604T
  • A610T
  • C632T
  • T649C
  • G661A
  • G685A
Deletions

seg4

562-570
Insertions

seg1

ins_0:GCCTTTA, ins_2334:GGCTCGTGTTTCTAC

seg2

ins_0:GTTTTC, ins_2358:AAT

seg3

ins_0:GCGTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAATGCTCGTGT

seg5

ins_0:GCATTTTCTTGTAAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTACTAAACTTAATTGTTTCTGAAAAAT

seg7

ins_0:TTCTTA, ins_1147:AAAAGTGCG

seg8

ins_1066:TAAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N148K
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

M1

  • M1:T15I

NA

  • NA:P42Q
  • NA:P51L
  • NA:L52S
  • NA:V71A
  • NA:I120V
  • NA:K186R
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:I361T
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

NP

  • NP:T66A
  • NP:T275A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:D132G
  • NS1:N152S
  • NS1:H201Y

PA

  • PA:D231G
  • PA:K312R
  • PA:S348N
  • PA:T352A
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:V474I

PB2

  • PB2:X303I
  • PB2:S444N
  • PB2:I492T
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A