GS_00J5GB2.1

USA/GS_00J5GB2.1/2026-07-30
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ852425.1.seg1/PZ852426.1.seg2/PZ852424.1.seg3/PZ852419.1.seg4/PZ852422.1.seg5/PZ852421.1.seg6/PZ852420.1.seg7/PZ852423.1.seg8
Submitting group
Date submitted
2026-08-21 05:01:37 UTC
Date released
2026-08-21 05:02:01 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-08-18

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-07-30
Isolate name
B/California/GKISBBBK79644/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2340 (100%)
Total inserted nucs seg1
6
Total SNPs seg1
51
Length seg2
2367 (100%)
Total inserted nucs seg2
9
Total SNPs seg2
60
Length seg3
2277 (100%)
Total inserted nucs seg3
32
Total SNPs seg3
55
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
59
Length seg5
1820 (100%)
Total inserted nucs seg5
70
Total SNPs seg5
37
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
38
Length seg7
1154 (100%)
Total inserted nucs seg7
7
Total SNPs seg7
20
Length seg8
1067 (99.6%)
Total inserted nucs seg8
5
Total SNPs seg8
25

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • G197A
  • A200G
  • A359G
  • G383A
  • C434T
  • T522C
  • C528A
  • A563G
  • A626G
  • G645A
  • C746A
  • A827G
  • G836A
  • C854T
  • A908G
  • A950G
  • T962C

seg2

  • G12A
  • A54G
  • G81A
  • T165C
  • T168C
  • T171C
  • T174C
  • C216T
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G

seg3

  • T88C
  • T111C
  • C117T
  • G129A
  • T339C
  • G414A
  • T423C
  • G465T
  • G549A
  • A618G
  • T654C
  • A771G
  • C813T
  • A828G
  • G867A
  • C897T
  • G906A
  • A935G

seg4

  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A417G
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A484G
  • C509T
  • T510C

seg5

  • C3T
  • T46C
  • A55G
  • A68C
  • C178T
  • T213G
  • A224G
  • A235G
  • G244A
  • G250A
  • T298C
  • C313T
  • T358C
  • G361A
  • A373G
  • C380T
  • A454G
  • A514G

seg6

  • T9C
  • C125A
  • T134C
  • G194A
  • T212C
  • A358G
  • C394T
  • C399T
  • A504G
  • C519T
  • C534T
  • A660C
  • A672G
  • T714A
  • C849T
  • A853G
  • T879C
  • T885G

seg7

  • C33T
  • C46T
  • A83G
  • T113C
  • T125A
  • G316A
  • A419G
  • G482A
  • G500T
  • G521A
  • G533A
  • G536A
  • A566G
  • C656T
  • T787C
  • C808T
  • G904A
  • A919G
  • A952G
  • A967G

seg8

  • G6A
  • G27A
  • A118G
  • T166C
  • C176T
  • G190A
  • T341C
  • A350G
  • A352C
  • T355C
  • C358A
  • T391C
  • C419T
  • G541A
  • C604T
  • A610T
  • C632T
  • G661A
Deletions

seg4

562-570
Insertions

seg1

ins_0:CTTTA, ins_2334:G

seg2

ins_0:GTTTTC, ins_2358:AAT

seg3

ins_0:GCGTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAAT

seg5

ins_0:GCATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAATGCT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTATTTCTGAAAAAT

seg7

ins_0:TCTTA, ins_1147:AA

seg8

ins_25:A, ins_1066:TAAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154T
  • HA1:T182K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

HA2

  • HA2:D71N

M1

  • M1:T15I
  • M1:R105K
  • M1:M177I

NA

  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:K285E
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:G346R
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

NEP

  • NEP:A19V
  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:I14L
  • NP:V62G
  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107D
  • NS1:L130F
  • NS1:H201Y

PA

  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V

PB1

  • PB1:M65I
  • PB1:I187M
  • PB1:V215M
  • PB1:V474I
  • PB1:K573R

PB2

  • PB2:X303I
  • PB2:E394G
  • PB2:I492T
  • PB2:X582E
  • PB2:S630N
Deletions

HA1

HA1:162-164
Insertions
N/A