GS_00J5GA4.1

USA/GS_00J5GA4.1/2026-07-26
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ852417.1.seg1/PZ852418.1.seg2/PZ852416.1.seg3/PZ852411.1.seg4/PZ852414.1.seg5/PZ852413.1.seg6/PZ852412.1.seg7/PZ852415.1.seg8
Submitting group
Date submitted
2026-08-21 05:01:37 UTC
Date released
2026-08-21 05:02:01 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-08-18

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-07-26
Isolate name
B/California/GKISBBBJ45960/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2356 (100%)
Total inserted nucs seg1
22
Total SNPs seg1
49
Length seg2
2367 (100%)
Total inserted nucs seg2
9
Total SNPs seg2
57
Length seg3
2275 (100%)
Total inserted nucs seg3
30
Total SNPs seg3
58
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
56
Length seg5
1817 (100%)
Total inserted nucs seg5
67
Total SNPs seg5
33
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
36
Length seg7
1154 (100%)
Total inserted nucs seg7
7
Total SNPs seg7
19
Length seg8
1066 (99.6%)
Total inserted nucs seg8
4
Total SNPs seg8
21

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • G197A
  • A200G
  • A209G
  • A359G
  • G383A
  • C434T
  • T497C
  • C528A
  • A563G
  • C602T
  • C746A
  • A827G
  • C854T
  • A950G
  • T962C
  • T968C
  • T995C

seg2

  • G12A
  • G27A
  • A54G
  • G81A
  • T168C
  • T171C
  • T174C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • G510A
  • C513T
  • A576G
  • A594G

seg3

  • T88C
  • T111C
  • C117T
  • A264G
  • T339C
  • G414A
  • T423C
  • G549A
  • A598G
  • A618G
  • T654C
  • A771G
  • C813T
  • G867A
  • A891G
  • C897T
  • A935G
  • G936A

seg4

  • C252A
  • C270T
  • G297A
  • A301G
  • T310C
  • G312T
  • A318G
  • G337A
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A477G

seg5

  • C3T
  • T46C
  • A55G
  • C66T
  • A89G
  • C178G
  • T213G
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T

seg6

  • T9C
  • C125A
  • T134C
  • G194A
  • T212C
  • T222C
  • A351G
  • A358G
  • C394T
  • C399T
  • A504G
  • C519T
  • C534T
  • C540T
  • C573A
  • G603A
  • A660C
  • T714A

seg7

  • C33T
  • C46T
  • A83G
  • T113C
  • T125A
  • G316A
  • A419G
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • G650A
  • C656T
  • C808T
  • A880G
  • A919G
  • A949G
  • A967G

seg8

  • G26A
  • A118G
  • A145G
  • T163C
  • G190A
  • T341C
  • A352T
  • T355C
  • C358A
  • T391C
  • C419T
  • G544A
  • C604T
  • A610T
  • C632T
  • G661A
  • G676A
  • T775C
Deletions

seg4

562-570
Insertions

seg1

ins_0:CCTTTA, ins_2334:GGCTCGTGTTTCTACT

seg2

ins_0:GTTTTC, ins_2358:AAT

seg3

ins_0:GTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAAT

seg5

ins_0:GCATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAACAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT

seg7

ins_0:TCTTA, ins_1147:AA

seg8

ins_1066:TAAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:K75E
  • HA1:S78P
  • HA1:V87I
  • HA1:I117V
  • HA1:A127T
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295K
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397N
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:T13I
  • NP:I21V
  • NP:V62G
  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:H201Y

PA

  • PA:I200V
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V
  • PA:E726V

PB1

  • PB1:M65I
  • PB1:I187M
  • PB1:E460G
  • PB1:V474I

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
  • PB2:R743K
Deletions

HA1

HA1:162-164
Insertions
N/A