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GS_00J5311.1
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USA/GS_00J5311.1/2026-07-15
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ859774.1.seg4/PZ859775.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-20 08:10:03 UTC
Date released
2026-08-20 08:10:19 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Indiana
Collection date
2026-07-15
Isolate name
A/swine/Indiana/A03690791/2026
INSDC
INSDC accession seg4
PZ859774.1
INSDC accession seg6
PZ859775.1
NCBI release date
2026-08-19
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.8%)
Total ambiguous nucs seg4
2
Total SNPs seg4
202
Length seg6
1410 (98%)
Total SNPs seg6
175
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
G
38
T
A
43
G
G
57
A
T
60
A
T
65
C
A
80
G
C
94
T
C
107
T
C
108
T
T
110
G
G
113
A
C
116
T
A
125
G
G
137
A
A
138
T
G
155
A
A
156
G
T
173
G
Show more
seg6
A
16
G
G
25
A
G
34
A
C
54
T
A
55
T
T
58
A
T
59
G
T
74
C
C
76
T
A
95
G
A
97
G
T
110
C
T
125
C
A
130
T
T
132
G
A
134
G
C
136
T
C
140
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
T
10
M
HA1:
I
25
L
HA1:
N
31
D
HA1:
G
50
R
HA1:
D
53
N
HA1:
H
56
Y
HA1:
E
62
K
HA1:
Q
75
H
HA1:
G
78
D
HA1:
Q
80
K
HA1:
K
83
E
HA1:
K
92
T
HA1:
N
96
S
HA1:
D
101
Y
HA1:
T
117
N
HA1:
E
119
K
HA1:
N
121
T
HA1:
D
122
Q
Show more
HA2
HA2:
I
32
T
HA2:
K
39
E
HA2:
N
49
T
HA2:
N
53
D
HA2:
L
55
V
HA2:
G
57
K
HA2:
N
116
S
HA2:
K
123
R
HA2:
K
124
R
HA2:
V
161
I
HA2:
D
164
N
HA2:
I
173
V
HA2:
E
177
Q
HA2:
I
186
V
HA2:
A
201
V
NA
NA:
T
16
I
NA:
S
18
A
NA:
F
23
L
NA:
I
30
V
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
N
43
D
NA:
P
45
S
NA:
M
51
V
NA:
L
52
V
NA:
I
62
K
NA:
T
69
D
NA:
N
70
K
NA:
I
73
V
NA:
A
82
T
NA:
G
93
N
NA:
L
126
F
Show more
SigPep
SigPep:
L
7
F
SigPep:
Y
9
C
SigPep:
V
14
I
SigPep:
F
15
I
Deletions
N/A
Insertions
N/A
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