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Influenza A/H3N2
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GS_00J52X9.1
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Download FASTA
Download metadata TSV
USA/GS_00J52X9.1/2026-08-04
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Girinathan,
H. Mammadova,
P. Leeson &
D. Gratalo
Perimeter
Submission details
Submission ID
PZ852685.1.seg1/PZ852684.1.seg2/PZ852686.1.seg4/PZ852682.1.seg5/PZ852687.1.seg6/PZ852681.1.seg7/PZ852683.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-20 08:10:03 UTC
Date released
2026-08-20 08:10:19 UTC
INSDC
bioprojectAccession
PRJNA989177
INSDC accession seg1
PZ852685.1
INSDC accession seg2
PZ852684.1
INSDC accession seg4
PZ852686.1
INSDC accession seg5
PZ852682.1
INSDC accession seg6
PZ852687.1
INSDC accession seg7
PZ852681.1
INSDC accession seg8
PZ852683.1
NCBI release date
2026-08-19
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2026-08-04
Isolate name
A/Virginia/GKISBBBK15769/2026
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2306 (98.5%)
Total SNPs seg1
114
Length seg2
2316 (98.9%)
Total SNPs seg2
114
Length seg4
1737 (100%)
Total SNPs seg4
128
Length seg5
1538 (98.2%)
Total SNPs seg5
59
Length seg6
1382 (93.2%)
Total SNPs seg6
20
Total unknown nucs seg6
41
Length seg7
1002 (97.6%)
Total SNPs seg7
27
Length seg8
867 (97.4%)
Total SNPs seg8
32
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
228
C
T
255
C
A
282
G
C
289
A
A
336
G
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
T
417
C
Show more
seg2
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
A
179
G
G
180
A
A
201
G
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
A
312
G
T
327
C
Show more
seg4
A
24
G
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
A
248
T
Show more
seg5
A
16
G
C
29
T
C
39
T
A
40
C
G
81
A
G
96
A
T
114
C
T
180
G
G
207
A
G
219
A
G
237
A
C
249
T
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
Show more
seg6
C
40
T
A
64
G
T
100
C
C
217
T
C
349
A
G
456
A
G
514
A
G
517
A
T
1015
C
A
1044
G
A
1079
G
A
1123
G
C
1144
T
A
1160
G
A
1166
G
A
1167
G
G
1168
A
G
1206
A
A
1298
G
G
1342
A
seg7
A
37
T
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
A
637
G
A
658
G
G
680
A
C
697
T
T
703
C
C
787
T
Show more
seg8
C
53
T
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
A
209
G
A
221
T
A
238
G
T
271
C
C
275
G
G
353
A
G
398
A
G
416
A
G
430
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
D
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
R
150
H
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
K
387
G
NA:
R
400
K
NA:
K
431
E
NP
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
L
185
F
NS1:
G
211
R
NS1:
K
221
E
NS1:
K
229
E
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
N
667
I
PB1:
E
742
D
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
Q
28
R
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
K
65
R
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
D
390
E
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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