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Influenza A/H1N1pdm
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GS_00J52SK.1
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USA/GS_00J52SK.1/2026-07-14
W. H. Clore &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ859764.1.seg4/PZ859765.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-20 07:39:47 UTC
Date released
2026-08-20 07:40:10 UTC
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
Pennsylvania
Collection date
2026-07-14
Isolate name
A/swine/Pennsylvania/A03690785/2026
INSDC
INSDC accession seg4
PZ859764.1
INSDC accession seg6
PZ859765.1
NCBI release date
2026-08-19
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg4
1701 (97.1%)
Total SNPs seg4
116
Length seg6
1410 (98.4%)
Total SNPs seg6
27
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
C
42
A
A
47
G
G
57
A
G
69
A
C
76
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
A
306
G
C
318
T
G
322
A
G
327
A
G
360
A
G
416
A
Show more
seg6
A
33
G
A
63
G
C
250
T
T
256
G
C
301
T
G
324
A
C
452
A
G
533
A
C
599
A
G
607
A
G
667
A
G
748
A
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
A
959
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
T
2
K
HA1:
K
54
Q
HA1:
S
74
R
HA1:
I
79
V
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
86
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
P
137
S
HA1:
K
142
R
HA1:
I
149
L
HA1:
N
156
G
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
H
72
Q
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
K
153
R
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
NA
NA:
T
9
A
NA:
T
19
A
NA:
A
81
V
NA:
V
83
G
NA:
A
98
V
NA:
V
106
I
NA:
S
200
N
NA:
R
220
K
NA:
S
247
N
NA:
I
264
T
NA:
K
386
E
NA:
V
453
T
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
SigPep:
A
17
T
Deletions
N/A
Insertions
N/A
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