GenSpectrum
Organisms
Influenza B/Victoria
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Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza B
Influenza B/Victoria
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Influenza B/Victoria
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GS_00J3NA2.1
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USA/GS_00J3NA2.1/2026-06-08
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ808393.1.seg1/PZ808394.1.seg2/PZ808395.1.seg3/PZ808396.1.seg4/PZ808397.1.seg5/PZ808398.1.seg6/PZ808399.1.seg7/PZ808400.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-12 05:02:51 UTC
Date released
2026-08-12 05:03:44 UTC
INSDC
bioprojectAccession
PRJNA967388
biosampleAccession
SAMN62184999
INSDC accession seg1
PZ808393.1
INSDC accession seg2
PZ808394.1
INSDC accession seg3
PZ808395.1
INSDC accession seg4
PZ808396.1
INSDC accession seg5
PZ808397.1
INSDC accession seg6
PZ808398.1
INSDC accession seg7
PZ808399.1
INSDC accession seg8
PZ808400.1
NCBI release date
2026-08-10
SRA run accession
SRR40001323
Clade
Clade HA
V1A.3a.2
Clade NA
B.8
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-06-08
Isolate name
B/California/LACPHL-INF02807/2026
INSDC seg4
lineage_seg4
vic
Alignment and QC
Length seg1
2261 (96.9%)
Total SNPs seg1
44
Length seg2
2310 (98%)
Total SNPs seg2
57
Length seg3
2181 (97.1%)
Total SNPs seg3
51
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
56
Length seg5
1683 (96.2%)
Total SNPs seg5
30
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
34
Length seg7
1130 (98.5%)
Total SNPs seg7
17
Length seg8
1029 (96.4%)
Total ambiguous nucs seg8
1
Total SNPs seg8
22
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg1
C
113
T
G
197
A
A
200
G
T
233
C
G
383
A
T
522
C
C
528
A
C
746
A
G
776
A
C
854
T
A
950
G
A
951
G
T
962
C
T
968
C
G
1064
A
G
1094
A
T
1100
C
G
1133
A
Show more
seg2
G
12
A
A
54
G
G
81
A
T
165
C
T
168
C
T
171
C
T
174
C
T
240
C
T
300
A
T
330
C
C
342
T
A
405
G
G
441
A
G
447
A
G
510
A
C
513
T
A
576
G
A
594
G
Show more
seg3
T
111
C
C
117
T
G
129
A
C
216
T
T
339
C
A
411
G
G
414
A
T
423
C
A
525
C
G
549
A
A
618
G
T
654
C
A
665
G
A
771
G
A
789
G
C
813
T
G
867
A
T
885
C
Show more
seg4
C
111
T
T
159
C
A
246
C
C
252
A
C
270
T
G
297
A
G
312
T
A
318
G
C
375
T
C
378
T
A
427
G
C
441
T
T
444
C
G
457
A
G
460
A
A
463
G
A
484
G
C
509
T
Show more
seg5
T
46
C
A
55
G
C
166
T
C
178
T
A
190
G
A
224
G
G
244
T
T
298
C
C
313
T
G
361
A
A
373
G
C
380
T
A
454
G
C
523
T
C
608
T
A
634
G
A
763
G
C
841
T
Show more
seg6
T
9
C
C
125
A
T
134
C
G
194
A
T
212
C
C
309
T
A
358
G
C
394
T
C
399
T
A
504
G
C
519
T
C
534
T
A
660
C
T
714
A
A
807
G
C
849
T
T
879
C
T
885
G
Show more
seg7
C
33
T
C
46
T
A
83
G
T
125
A
C
146
T
G
316
A
A
419
G
G
482
A
G
500
T
G
521
A
G
536
A
A
566
G
C
656
T
A
850
T
A
919
G
A
967
G
T
1086
C
seg8
T
103
C
A
118
G
T
163
C
G
190
A
A
267
G
T
341
C
A
352
C
A
374
G
T
391
C
C
398
T
C
419
T
G
422
A
T
577
C
C
604
T
A
610
T
C
632
T
G
661
A
T
775
C
Show more
Deletions
seg4
562-570
Insertions
seg6
ins_0:ATGAACA
Amino acid substitutions
Substitutions called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
K
56
N
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
A
154
E
HA1:
I
175
T
HA1:
G
184
K
HA1:
A
199
T
HA1:
K
203
R
HA1:
S
208
P
HA1:
S
255
P
HA1:
I
267
V
HA1:
R
279
K
M1
M1:
T
15
I
M1:
R
105
K
NA
NA:
P
42
Q
NA:
I
45
T
NA:
R
65
H
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
D
384
G
NA:
A
395
V
NA:
S
397
K
NA:
V
401
I
NEP
NEP:
L
30
S
NEP:
S
93
P
NP
NP:
I
9
M
NP:
T
66
A
NP:
V
453
A
NP:
S
513
N
NS1
NS1:
K
79
R
NS1:
Y
104
H
NS1:
K
107
N
NS1:
T
115
A
NS1:
P
123
S
NS1:
L
130
F
NS1:
D
131
N
NS1:
H
201
Y
PA
PA:
N
222
S
PA:
K
312
R
PA:
T
352
A
PA:
S
530
T
PA:
G
708
A
PA:
F
709
I
PA:
N
714
S
PA:
I
723
V
PB1
PB1:
M
65
I
PB1:
I
317
V
PB1:
I
462
V
PB1:
V
474
I
PB1:
E
748
D
PB2
PB2:
X
303
I
PB2:
I
492
T
PB2:
X
582
E
PB2:
S
630
N
Deletions
HA1
HA1:162-164
Insertions
N/A
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