GS_00J3KLJ.1

USA/GS_00J3KLJ.1/2026-07-19
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ791653.1.seg1/PZ791654.1.seg2/PZ791652.1.seg3/PZ791648.1.seg4/PZ791650.1.seg5/PZ791649.1.seg6/PZ791651.1.seg8
Submitting group
Date submitted
2026-08-08 05:01:36 UTC
Date released
2026-08-08 05:02:36 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg8
NCBI release date
2026-08-05

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Sample details

Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2026-07-19
Isolate name
B/Virginia/GKISBBBI89416/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2344 (100%)
Total inserted nucs seg1
10
Total SNPs seg1
38
Length seg2
2367 (100%)
Total inserted nucs seg2
9
Total SNPs seg2
49
Length seg3
2274 (100%)
Total inserted nucs seg3
29
Total SNPs seg3
50
Length seg4
1841 (98.1%)
Total deleted nucs seg4
9
Total SNPs seg4
51
Length seg5
1815 (100%)
Total inserted nucs seg5
65
Total SNPs seg5
33
Length seg6
1515 (100%)
Total inserted nucs seg6
114
Total SNPs seg6
36
Length seg8
1061 (99.5%)
Total SNPs seg8
21

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • A200G
  • T219C
  • G251A
  • G383A
  • T386C
  • C434T
  • T522C
  • C528A
  • C746A
  • A764G
  • C830T
  • C854T
  • A950G
  • T962C
  • T968C
  • C1037T
  • G1064A

seg2

  • G12A
  • A54G
  • G81A
  • T171C
  • T240C
  • T300A
  • T315C
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • C513T
  • T586C
  • A594G
  • A705G
  • G768A
  • A801G

seg3

  • T111C
  • C117T
  • T339C
  • G375A
  • G414A
  • T423C
  • A495G
  • G549A
  • A618G
  • T654C
  • G700A
  • A711G
  • A771G
  • C813T
  • A852G
  • G867A
  • G888A
  • C897T

seg4

  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
  • T510C

seg5

  • C3T
  • T46C
  • C178T
  • A224G
  • A235G
  • G250A
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • T742C
  • A763G
  • C841T

seg6

  • T9C
  • C125A
  • C128T
  • T155C
  • T212C
  • G237A
  • C318A
  • A358G
  • C394T
  • C399T
  • C429T
  • A504G
  • C519T
  • A557G
  • A660C
  • T714A
  • C849T
  • T879C

seg8

  • G26A
  • T163C
  • G190A
  • A259G
  • T341C
  • A352C
  • T391C
  • T400C
  • C419T
  • A426G
  • C604T
  • A610T
  • C632T
  • G661A
  • G685A
  • T775C
  • C882T
  • A950G
Deletions

seg4

562-570
Insertions

seg1

ins_0:GCCTTTA, ins_2334:GGC

seg2

ins_0:GTTTTC, ins_2358:AAT

seg3

ins_0:GTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAA

seg5

ins_0:ATTTTCTTGTAAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT

seg6

ins_0:TCTCAAAACTGAAGCAAATAGGCAAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTACTAAACTTAATTGTTT

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K
  • HA1:I318V

NA

  • NA:P42Q
  • NA:T43I
  • NA:L52S
  • NA:V71A
  • NA:I120V
  • NA:K186R
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I
  • NA:D463N

NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

NP

  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y

PA

  • PA:D234N
  • PA:K312R
  • PA:T352A
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:V474I

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
  • PB2:R686K
Deletions

HA1

HA1:162-164
Insertions
N/A