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Influenza A/H5N1
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GS_00J3DLQ.1
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Germany/GS_00J3DLQ.1/2026-06-08
A. K. Ahrens,
M. Beer,
C. Grund,
T. Harder &
A. Pohlmann
Friedrich-Loeffler-Institut, Institute of Diagnostic Virology (IVD)
Submission details
Submission ID
PZ783542.1.seg1/PZ783543.1.seg2/PZ783544.1.seg3/PZ783545.1.seg4/PZ783546.1.seg5/PZ783547.1.seg6/PZ783548.1.seg7/PZ783549.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-08-05 08:39:17 UTC
Date released
2026-08-05 08:39:57 UTC
Clade
clade
2.3.4.4b
Sample details
Collection country
Germany
Collection subdivision level 1
Germany-HH
Collection date
2026-06-08
Isolate name
A/swan/Germany-HH/2026AI03710/2026
INSDC
INSDC accession seg1
PZ783542.1
INSDC accession seg2
PZ783543.1
INSDC accession seg3
PZ783544.1
INSDC accession seg4
PZ783545.1
INSDC accession seg5
PZ783546.1
INSDC accession seg6
PZ783547.1
INSDC accession seg7
PZ783548.1
INSDC accession seg8
PZ783549.1
NCBI release date
2026-08-03
INSDC seg4
subtype_seg4
H5
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2280 (97.4%)
Total SNPs seg1
281
Length seg2
2274 (97.1%)
Total SNPs seg2
207
Length seg3
2151 (96.3%)
Total SNPs seg3
165
Length seg4
1704 (96.9%)
Total ambiguous nucs seg4
1
Total deleted nucs seg4
3
Total SNPs seg4
187
Length seg5
1497 (95.7%)
Total SNPs seg5
99
Length seg6
1410 (96.7%)
Total SNPs seg6
149
Length seg7
982 (95.6%)
Total SNPs seg7
71
Length seg8
838 (96.9%)
Total SNPs seg8
245
Nucleotide mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
seg1
A
33
G
C
55
T
A
57
G
C
69
T
C
85
T
A
87
G
T
105
C
C
120
A
A
126
G
A
144
G
T
159
C
A
165
G
A
195
T
C
198
T
G
210
A
T
228
C
A
249
T
A
252
G
Show more
seg2
A
54
G
A
150
T
T
171
C
G
195
A
T
207
C
G
228
A
C
241
T
T
252
C
T
255
C
G
258
A
G
261
A
T
264
C
G
267
A
T
285
C
A
288
G
G
342
T
T
363
C
T
384
C
Show more
seg3
G
81
A
A
93
G
A
102
G
G
120
A
G
144
A
A
171
G
T
186
C
G
195
A
A
211
G
C
228
G
G
249
A
T
252
C
A
255
G
C
261
T
G
270
A
A
279
T
T
324
C
T
333
C
Show more
seg4
A
30
C
G
36
A
T
45
C
C
54
T
T
57
C
C
63
T
C
102
T
A
123
G
G
174
A
A
177
G
T
183
C
C
195
T
C
199
T
A
207
G
C
219
G
G
225
A
G
227
A
A
228
G
Show more
seg5
G
57
A
A
96
G
A
99
G
T
111
C
T
129
C
T
132
C
A
135
G
A
150
G
T
165
C
A
183
G
T
216
C
C
279
T
A
312
G
T
327
C
C
333
T
C
336
T
A
342
G
A
351
G
Show more
seg6
G
35
A
A
37
G
T
49
C
G
66
A
A
68
G
G
69
A
T
90
C
A
92
G
C
122
T
T
125
C
T
128
C
T
134
C
G
137
A
A
149
G
C
150
T
A
155
G
G
156
C
T
179
C
Show more
seg7
C
46
T
A
76
G
G
112
A
C
142
T
C
188
A
A
196
G
A
205
G
G
268
A
C
274
T
T
275
C
A
277
G
T
292
C
T
301
C
T
307
C
T
316
C
G
319
A
A
322
G
G
331
A
Show more
seg8
A
25
G
G
29
T
A
30
G
A
32
G
A
33
T
C
35
A
T
36
A
C
37
G
G
38
C
T
50
C
T
53
C
A
55
T
A
59
T
C
65
T
A
66
G
A
68
C
A
69
C
G
74
A
Show more
Deletions
seg4
1054-1056
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
HA
HA:
K
3
N
HA:
R
69
K
HA:
N
88
R
HA:
K
98
R
HA:
A
99
D
HA:
S
100
N
HA:
D
110
S
HA:
F
111
L
HA:
L
120
M
HA:
T
124
I
HA:
Q
131
L
HA:
S
139
P
HA:
D
142
E
HA:
A
143
T
HA:
S
145
L
HA:
S
149
A
HA:
P
152
S
HA:
H
154
Q
Show more
M1
M1:
L
55
M
M1:
T
140
A
M1:
F
144
L
M1:
M
165
I
M1:
K
230
R
M1:
N
232
D
M1:
M
248
L
M2
M2:
K
12
R
M2:
E
14
G
M2:
K
18
N
M2:
C
19
Y
M2:
D
21
G
M2:
V
28
I
M2:
I
51
V
M2:
L
55
F
M2:
S
82
N
NA
NA:
K
6
R
NA:
I
10
T
NA:
V
16
M
NA:
V
17
I
NA:
H
44
Y
NA:
A
46
P
NA:
F
74
C
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
T
NA:
I
94
V
NA:
V
99
I
NA:
H
100
Y
NA:
I
106
V
NA:
H
155
Y
NA:
T
188
I
NA:
M
258
I
NA:
T
289
M
Show more
NP
NP:
V
105
M
NP:
M
136
L
NP:
A
234
S
NP:
L
266
M
NP:
A
353
V
NP:
N
395
T
NP:
S
451
A
NS1
NS1:
N
4
S
NS1:
I
6
V
NS1:
T
7
S
NS1:
Y
14
F
NS1:
I
18
V
NS1:
L
21
R
NS1:
L
22
F
NS1:
S
23
A
NS1:
M
24
D
NS1:
R
25
Q
NS1:
D
26
E
NS1:
M
27
L
NS1:
D
33
L
NS1:
A
42
S
NS1:
K
44
R
NS1:
L
54
I
NS1:
R
55
E
NS1:
V
56
A
Show more
NS2
NS2:
N
4
S
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
R
37
S
NS2:
I
40
L
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
G
NS2:
T
64
K
NS2:
N
67
E
NS2:
E
68
Q
NS2:
S
70
G
NS2:
A
81
E
NS2:
C
83
V
NS2:
N
85
H
Show more
PA
PA:
I
63
V
PA:
K
104
T
PA:
T
129
I
PA:
V
201
I
PA:
C
212
R
PA:
K
228
N
PA:
L
284
M
PA:
N
350
H
PA:
R
361
K
PA:
K
399
E
PA:
P
400
S
PA:
V
432
I
PA:
L
504
I
PA:
R
536
K
PA:
R
544
E
PA:
E
553
A
PA:
P
585
L
PA:
F
586
L
Show more
PAX
PAX:
I
63
V
PAX:
K
104
T
PAX:
T
129
I
PAX:
S
193
N
PAX:
G
209
E
PAX:
L
210
P
PAX:
S
219
Y
PAX:
L
221
R
PAX:
I
222
T
PAX:
N
228
T
PAX:
R
250
Q
PB1
PB1:
K
134
N
PB1:
E
172
D
PB1:
G
177
E
PB1:
I
182
T
PB1:
M
195
V
PB1:
K
197
R
PB1:
S
216
N
PB1:
T
296
A
PB1:
S
375
N
PB1:
E
460
Q
PB1:
T
478
S
PB1:
C
490
F
PB1:
M
535
I
PB1:
D
536
N
PB1:
P
558
T
PB1:
E
581
D
PB1:
P
598
L
PB1:
A
609
V
Show more
PB2
PB2:
H
110
Y
PB2:
I
292
V
PB2:
N
334
S
PB2:
K
340
R
PB2:
K
355
R
PB2:
L
464
M
PB2:
A
471
T
PB2:
Q
508
R
PB2:
S
579
P
PB2:
S
590
G
PB2:
P
628
Q
PB2:
A
661
T
PB2:
R
699
K
PB2:
I
726
V
PB2:
M
727
G
PB2:
F
741
S
Deletions
HA
HA:344
Insertions
N/A
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