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GS_00J32Z9.1
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New_Zealand/GS_00J32Z9.1/2026-07-15
R. Jauregui,
Y. Low,
S. Maday,
E. Gias,
H. Johnston &
A. Wilson
Ministry for Primary Industries, National Animal Health Laboratory
Submission details
Submission ID
PZ755754.1.seg1/PZ755755.1.seg2/PZ755756.1.seg3/PZ755757.1.seg4/PZ755758.1.seg5/PZ755759.1.seg6/PZ755760.1.seg7/PZ755761.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-29 08:39:23 UTC
Date released
2026-07-29 08:39:29 UTC
Clade
clade
2.3.4.4b
Sample details
Collection country
New Zealand
Collection subdivision level 1
Wellington
Collection date
2026-07-15
Isolate name
A/Brown Skua/Wellington/W26_1446/2026
INSDC
INSDC accession seg1
PZ755754.1
INSDC accession seg2
PZ755755.1
INSDC accession seg3
PZ755756.1
INSDC accession seg4
PZ755757.1
INSDC accession seg5
PZ755758.1
INSDC accession seg6
PZ755759.1
INSDC accession seg7
PZ755760.1
INSDC accession seg8
PZ755761.1
NCBI release date
2026-07-28
INSDC seg4
subtype_seg4
H5
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2280 (97.2%)
Total SNPs seg1
366
Total unknown nucs seg1
4
Length seg2
2274 (97.1%)
Total SNPs seg2
256
Total unknown nucs seg2
1
Length seg3
2145 (96.3%)
Total deleted nucs seg3
6
Total SNPs seg3
164
Length seg4
1704 (96.5%)
Frame shifts seg4
HA:155-157(nt:484-492)
Total deleted nucs seg4
4
Total frame shifts seg4
1
Total inserted nucs seg4
1
Total SNPs seg4
183
Total unknown nucs seg4
8
Length seg5
1497 (95.5%)
Total SNPs seg5
178
Total unknown nucs seg5
3
Length seg6
1410 (96.6%)
Total SNPs seg6
142
Total unknown nucs seg6
1
Length seg7
759 (73.8%)
Total SNPs seg7
53
Total unknown nucs seg7
1
Length seg8
693 (80%)
Frame shifts seg8
NS1:23-26(nt:80-92),NS1:59-60(nt:188-193)
Total deleted nucs seg8
6
Total frame shifts seg8
2
Total inserted nucs seg8
6
Total SNPs seg8
195
Total unknown nucs seg8
1
Nucleotide mutations
Mutations called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
seg1
A
33
G
G
63
A
C
69
T
A
87
G
A
90
C
G
102
T
T
105
C
T
108
C
G
123
A
A
126
G
A
135
G
A
141
G
T
156
C
T
159
A
C
198
T
C
207
T
A
211
C
G
222
A
Show more
seg2
A
54
G
A
57
G
G
60
C
T
75
C
T
81
C
C
90
T
T
93
G
C
138
T
C
153
T
A
168
G
G
180
A
G
195
A
A
199
T
G
204
A
C
216
T
G
228
A
C
241
T
A
243
G
Show more
seg3
G
81
A
A
117
G
G
120
A
G
144
A
A
171
G
C
180
T
T
186
C
G
195
A
C
206
T
A
207
G
A
211
G
C
228
A
G
249
A
A
255
G
G
270
A
A
279
T
G
320
A
A
321
G
Show more
seg4
A
30
C
G
36
A
T
39
A
C
54
T
T
57
C
C
63
T
C
90
T
C
102
T
G
114
A
A
123
G
T
141
C
G
174
A
T
183
C
C
195
T
C
199
T
A
207
G
T
216
A
C
219
G
Show more
seg5
G
57
A
T
72
C
G
81
A
A
96
G
T
111
C
G
117
A
T
147
C
T
153
C
G
159
A
T
162
C
T
165
C
A
166
G
C
195
T
C
198
T
T
201
C
A
207
G
T
216
C
G
219
A
Show more
seg6
G
35
A
T
43
C
G
69
A
A
78
G
T
80
C
T
90
C
A
92
G
C
110
T
C
122
T
T
125
C
T
134
C
G
137
A
C
150
T
A
154
C
A
155
G
G
156
C
T
179
C
T
185
C
Show more
seg7
A
76
G
G
112
A
A
127
G
T
139
C
C
142
T
A
196
G
A
205
G
G
268
A
C
274
T
T
275
C
A
279
G
A
285
C
A
289
G
T
292
C
T
301
C
T
307
C
A
313
G
T
316
C
Show more
seg8
G
29
T
A
30
G
A
32
G
A
33
T
C
35
A
T
36
A
C
37
G
G
38
C
T
50
C
T
53
C
A
55
T
A
59
T
C
65
T
A
66
G
A
68
C
A
69
C
A
71
C
G
74
A
Show more
Deletions
seg3
1924-1929
seg4
483, 1054-1056
seg8
90, 93, 194-197
Insertions
seg4
ins_492:C
seg8
ins_79:TG, ins_187:TCGT
Amino acid substitutions
Substitutions called relative to the
NC_007357.1
,
NC_007358.1
,
NC_007359.1
,
NC_007362.1
,
NC_007360.1
,
NC_007361.1
,
NC_007363.1
&
NC_007364.1
references
Substitutions
HA
HA:
K
3
N
HA:
R
69
K
HA:
N
88
R
HA:
K
98
R
HA:
S
100
N
HA:
D
110
S
HA:
F
111
L
HA:
L
120
M
HA:
T
124
I
HA:
S
139
P
HA:
D
142
E
HA:
A
143
T
HA:
S
145
L
HA:
S
149
A
HA:
S
171
D
HA:
R
178
I
HA:
Q
185
R
HA:
V
190
I
Show more
M1
M1:
N
85
S
M1:
N
87
T
M1:
K
101
R
M1:
T
140
A
M1:
F
144
L
M1:
M
165
I
M1:
A
200
V
M1:
K
230
R
M1:
N
232
D
M1:
M
248
L
M2
M2:
E
14
G
M2:
K
18
N
NA
NA:
I
8
T
NA:
V
17
I
NA:
I
20
V
NA:
H
44
Y
NA:
Q
45
P
NA:
A
46
P
NA:
T
76
A
NA:
K
78
Q
NA:
A
81
T
NA:
V
99
I
NA:
H
100
Y
NA:
H
155
Y
NA:
T
188
I
NA:
M
258
I
NA:
L
269
M
NA:
E
287
D
NA:
T
289
M
NA:
V
321
I
Show more
NP
NP:
I
41
V
NP:
I
63
V
NP:
T
130
P
NP:
M
136
L
NP:
I
197
V
NP:
F
230
L
NP:
A
353
V
NP:
S
450
N
NP:
S
451
A
NP:
D
497
V
NS1
NS1:
I
6
V
NS1:
T
7
S
NS1:
Y
14
F
NS1:
I
18
V
NS1:
L
21
R
NS1:
L
22
F
NS1:
C
28
G
NS1:
D
33
L
NS1:
A
42
S
NS1:
K
44
R
NS1:
L
54
I
NS1:
R
55
E
NS1:
V
56
T
NS1:
K
63
Q
NS1:
D
67
R
NS1:
K
70
E
NS1:
S
71
D
NS1:
T
73
S
Show more
NS2
NS2:
I
6
V
NS2:
T
7
S
NS2:
Q
14
M
NS2:
E
22
G
NS2:
V
26
E
NS2:
R
37
S
NS2:
I
40
L
NS2:
S
48
A
NS2:
M
49
V
NS2:
N
60
S
NS2:
A
63
G
NS2:
T
64
K
NS2:
N
67
E
NS2:
E
68
Q
NS2:
Q
71
L
PA
PA:
T
61
M
PA:
I
63
V
PA:
G
99
E
PA:
T
129
I
PA:
V
201
I
PA:
C
212
R
PA:
S
224
P
PA:
K
228
N
PA:
L
342
M
PA:
R
361
K
PA:
K
399
E
PA:
P
400
S
PA:
M
441
V
PA:
V
450
I
PA:
D
479
E
PA:
L
504
I
PA:
R
536
K
PA:
R
544
E
Show more
PAX
PAX:
T
61
M
PAX:
I
63
V
PAX:
G
99
E
PAX:
T
129
I
PAX:
S
193
N
PAX:
G
209
E
PAX:
L
210
P
PAX:
P
215
L
PAX:
V
218
A
PAX:
S
219
F
PAX:
L
221
R
PAX:
I
222
T
PAX:
N
228
T
PAX:
S
245
N
PAX:
R
250
Q
PAX:
K
252
R
PB1
PB1:
T
59
S
PB1:
K
134
N
PB1:
G
177
E
PB1:
I
182
T
PB1:
E
264
D
PB1:
L
378
M
PB1:
G
399
D
PB1:
K
429
R
PB1:
E
460
Q
PB1:
T
478
S
PB1:
C
490
F
PB1:
M
535
I
PB1:
D
536
N
PB1:
P
558
T
PB1:
R
584
H
PB1:
P
598
L
PB1:
A
609
V
PB1:
G
610
C
PB1:
M
646
I
PB1:
G
754
R
PB2
PB2:
L
154
F
PB2:
R
251
K
PB2:
N
334
S
PB2:
K
355
R
PB2:
K
443
R
PB2:
I
463
V
PB2:
L
464
M
PB2:
A
471
T
PB2:
V
478
I
PB2:
Q
508
R
PB2:
K
574
R
PB2:
S
579
P
PB2:
S
590
G
PB2:
I
616
V
PB2:
P
628
Q
PB2:
R
699
K
PB2:
M
727
G
PB2:
F
741
S
Deletions
HA
HA:344
NS1
NS1:27, NS1:61
PA
PA:634, PA:635
Insertions
N/A
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