GS_00J2D5P.1

USA/GS_00J2D5P.1/2026-07-06
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ723693.1.seg1/PZ723694.1.seg2/PZ723692.1.seg3/PZ723687.1.seg4/PZ723690.1.seg5/PZ723689.1.seg6/PZ723688.1.seg7/PZ723691.1.seg8
Submitting group
Date submitted
2026-07-22 05:03:45 UTC
Date released
2026-07-22 05:04:49 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-07-21

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Sample details

Collection country
USA
Collection subdivision level 1
New Jersey
Collection date
2026-07-06
Isolate name
B/New Jersey/GKISBBBJ02037/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2339 (100%)
Total inserted nucs seg1
5
Total SNPs seg1
44
Length seg2
2347 (99.5%)
Total inserted nucs seg2
1
Total SNPs seg2
51
Length seg3
2271 (100%)
Total inserted nucs seg3
26
Total SNPs seg3
48
Length seg4
1843 (98.2%)
Total deleted nucs seg4
9
Total SNPs seg4
49
Length seg5
1795 (100%)
Total inserted nucs seg5
45
Total SNPs seg5
34
Length seg6
1526 (100%)
Total inserted nucs seg6
125
Total SNPs seg6
38
Length seg7
1144 (99.5%)
Total inserted nucs seg7
3
Total SNPs seg7
24
Length seg8
1066 (99.6%)
Total inserted nucs seg8
4
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • T56C
  • C113T
  • A200G
  • T219C
  • G251A
  • G383A
  • T386C
  • C434T
  • T522C
  • C528A
  • C746A
  • A764G
  • C830T
  • C854T
  • G860A
  • A911G
  • A950G
  • T962C

seg2

  • G12A
  • A54G
  • G81A
  • T171C
  • T240C
  • T300A
  • T315C
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • C513T
  • T586C
  • A594G
  • A705G
  • G768A
  • A801G

seg3

  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A705G
  • A711G
  • A771G
  • C813T
  • G867A
  • G888A
  • C897T
  • A935G
  • G936A
  • A987G

seg4

  • T159C
  • C252A
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • T489G
  • C509T
  • T510C

seg5

  • C3T
  • T46C
  • C178T
  • A224G
  • A235G
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A382G
  • A454G
  • C523T
  • C608T
  • A634G
  • T742C
  • A763G
  • C841T

seg6

  • T9C
  • C125A
  • C128T
  • T155C
  • T212C
  • C318A
  • A358G
  • C394T
  • C399T
  • C429T
  • A504G
  • C519T
  • A557G
  • A624G
  • A660C
  • T714A
  • C849T
  • T879C

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • A377G
  • A419G
  • A476G
  • G482A
  • G500T
  • T515C
  • G521A
  • G536A
  • C542T
  • A566G
  • C656T
  • G668A
  • T877C
  • A919G

seg8

  • G26A
  • A118G
  • T163C
  • G190A
  • A259G
  • T341C
  • A352C
  • T391C
  • T400C
  • C419T
  • A426G
  • C604T
  • A610T
  • C632T
  • G661A
  • G685A
  • T775C
  • C882T
Deletions

seg4

562-570
Insertions

seg1

ins_0:CTTTA

seg2

ins_0:C

seg3

ins_0:TGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAA

seg5

ins_0:TGTAAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCAAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTACTAAACTTAATTGTTTCTGAAAA

seg7

ins_0:TTA

seg8

ins_1066:TAAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

BM2

  • BM2:K67T
  • BM2:T69K

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:I137M
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

M1

  • M1:T15I

NA

  • NA:P42Q
  • NA:T43I
  • NA:L52S
  • NA:V71A
  • NA:I120V
  • NA:K186R
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I
  • NA:I427M

NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

NP

  • NP:T66A
  • NP:V427I
  • NP:V453A
  • NP:G454S

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y

PA

  • PA:K312R
  • PA:T352A
  • PA:C397Y
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:V474I

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
  • PB2:R686K
Deletions

HA1

HA1:162-164
Insertions
N/A