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GS_00J29SJ.1
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Peru/GS_00J29SJ.1/2025-01-31
W. Lizarraga,
V. Hurtado,
C. Padilla,
I. Silva,
L. Barcena,
A. Nunez,
V. Jimenez,
V. Dominguez,
H. Bailon,
O. Caceres &
M. Galarza
Instituto Nacional de Salud, Lima
Submission details
Submission ID
PZ683566.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-20 05:30:16 UTC
Date released
2026-07-20 05:31:23 UTC
INSDC
bioprojectAccession
PRJNA1473293
INSDC accession
PZ683566.1
NCBI release date
2026-07-19
NCBI update date
2026-07-19
Clade & Lineage
Clade
1V_D.2
Sample details
Collection country
Peru
Collection subdivision level 1
Loreto
Collection date
2025-01-31
Isolate name
DENV_001/LOR/PER/2025
Alignment and QC
Length
10168 (76.6%)
Total SNPs
650
Total unknown nucs
1948
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
T
171
G
C
253
T
T
274
C
G
302
A
G
316
A
C
346
T
G
349
A
A
355
G
A
363
G
A
372
G
T
397
C
C
419
T
G
436
C
C
443
T
C
451
A
G
466
A
C
481
T
A
499
G
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Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
G
70
S
C:
N
90
S
C:
N
93
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
I
293
T
E:
S
339
T
E:
I
436
V
E:
I
439
V
E:
S
449
C
NS1
NS1:
V
93
A
NS1:
S
94
N
NS1:
I
224
T
NS1:
T
307
I
NS1:
L
318
V
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
L
12
I
NS2A:
I
15
V
NS2A:
T
44
I
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
E
115
K
NS2A:
D
139
E
NS2A:
S
142
P
NS2A:
A
147
T
NS2B
NS2B:
V
11
I
NS2B:
I
106
V
NS3
NS3:
E
43
D
NS3:
A
91
T
NS3:
A
112
T
NS3:
K
117
R
NS3:
T
118
S
NS3:
P
119
L
NS3:
R
185
K
NS3:
V
221
I
NS3:
K
255
R
NS3:
Y
349
H
NS3:
V
384
I
NS3:
I
474
V
NS3:
T
501
P
NS3:
I
520
V
NS4A
NS4A:
Q
19
L
NS4A:
R
76
K
NS4A:
I
89
T
NS4A:
A
93
T
NS4B
NS4B:
H
17
Y
NS4B:
A
20
T
NS4B:
H
24
Q
NS4B:
A
27
T
NS4B:
H
34
R
NS4B:
I
48
V
NS5
NS5:
T
27
I
NS5:
I
34
M
NS5:
R
367
Q
NS5:
A
370
T
NS5:
R
378
K
NS5:
A
616
V
NS5:
S
629
L
NS5:
T
651
A
NS5:
E
833
D
NS5:
D
834
E
prM
prM:
T
59
A
prM:
E
72
D
prM:
K
122
R
Deletions
N/A
Insertions
N/A
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