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Influenza A/H3N2
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GS_00J229S.1
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Download FASTA
Download metadata TSV
USA/GS_00J229S.1/2026-06-30
A. Rothstein,
G. Muir,
A. Sum,
A. Simas,
B. Lu,
B. Girinathan,
H. Mammadova,
P. Leeson &
D. Gratalo
Perimeter
Submission details
Submission ID
PZ687495.1.seg1/PZ687494.1.seg2/PZ687493.1.seg3/PZ687496.1.seg4/PZ687491.1.seg5/PZ687497.1.seg6/PZ687490.1.seg7/PZ687492.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-15 08:10:10 UTC
Date released
2026-07-15 08:10:34 UTC
INSDC
bioprojectAccession
PRJNA989177
INSDC accession seg1
PZ687495.1
INSDC accession seg2
PZ687494.1
INSDC accession seg3
PZ687493.1
INSDC accession seg4
PZ687496.1
INSDC accession seg5
PZ687491.1
INSDC accession seg6
PZ687497.1
INSDC accession seg7
PZ687490.1
INSDC accession seg8
PZ687492.1
NCBI release date
2026-07-14
Clade
Clade HA
K
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Florida
Collection date
2026-06-30
Isolate name
A/Florida/GKISBBBJ05989/2026
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg1
2318 (99%)
Total SNPs seg1
105
Length seg2
2316 (98.9%)
Total SNPs seg2
110
Length seg3
2214 (99.1%)
Total SNPs seg3
92
Length seg4
1737 (100%)
Total SNPs seg4
127
Length seg5
1541 (98.4%)
Total SNPs seg5
59
Length seg6
1444 (100%)
Total inserted nucs seg6
5
Total SNPs seg6
18
Length seg7
1004 (97.8%)
Total SNPs seg7
28
Length seg8
869 (97.6%)
Total SNPs seg8
35
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg1
T
27
C
C
54
T
G
57
A
T
75
C
G
87
A
C
192
T
C
198
T
T
255
C
A
282
G
C
289
A
A
336
G
G
343
A
G
347
A
A
369
G
G
375
A
A
402
G
T
417
C
T
426
C
Show more
seg2
C
46
T
G
57
A
C
84
A
A
129
G
A
132
T
A
135
G
C
141
T
T
171
C
A
179
G
G
180
A
A
213
T
A
219
G
G
258
A
C
282
T
C
306
T
T
327
C
G
336
A
A
342
T
Show more
seg3
G
22
A
A
99
G
A
120
C
C
144
T
A
156
G
T
174
C
T
177
C
G
210
A
T
222
C
G
243
A
A
324
T
A
333
G
C
340
T
A
342
G
A
345
G
G
363
A
T
369
C
A
396
G
Show more
seg4
A
24
G
T
35
C
T
42
A
G
56
T
A
71
C
C
72
A
T
74
A
C
77
T
C
89
T
G
155
A
A
163
G
C
189
T
G
199
A
C
203
A
C
208
T
G
213
A
G
214
A
G
222
A
Show more
seg5
A
16
G
C
29
T
A
40
C
G
81
A
G
96
A
T
180
G
G
207
A
G
219
A
G
237
A
C
249
T
A
276
C
A
351
G
G
390
A
G
432
T
G
436
T
T
447
C
A
451
C
C
459
T
Show more
seg6
C
40
T
A
64
G
T
100
C
A
246
C
C
349
A
G
456
A
G
517
A
C
797
A
T
945
C
T
1015
C
A
1044
G
A
1079
G
A
1160
G
G
1206
A
G
1342
A
G
1390
A
A
1410
G
T
1413
C
seg7
A
37
T
G
94
A
C
188
T
G
205
A
G
214
T
A
241
G
T
292
C
T
298
C
A
466
G
A
481
G
C
493
T
A
517
G
G
523
A
T
589
C
A
637
G
A
658
G
G
680
A
C
697
T
Show more
seg8
C
53
T
T
77
C
G
83
A
G
102
A
A
104
C
C
116
T
C
123
A
T
125
C
G
192
T
T
205
C
T
218
C
A
238
G
T
271
C
C
275
G
G
353
A
A
365
G
G
398
A
A
406
C
Show more
Deletions
N/A
Insertions
seg6
ins_0:GG, ins_1439:ACT
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
K
2
N
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
K
HA1:
D
53
N
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
96
S
HA1:
N
121
K
HA1:
T
131
K
HA1:
T
135
K
HA1:
S
138
A
HA1:
R
142
G
HA1:
N
145
S
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
K
143
E
HA2:
G
155
E
HA2:
D
160
N
HA2:
I
193
M
HA2:
V
200
I
M1
M1:
V
219
I
M2
M2:
P
25
L
M2:
S
31
N
M2:
L
54
F
M2:
N
82
S
M2:
D
88
A
NA
NA:
K
80
T
NA:
R
150
H
NA:
H
264
N
NA:
V
313
A
NA:
D
346
G
NA:
N
358
D
NA:
N
385
D
NA:
R
400
K
NA:
H
468
R
NA:
I
469
T
NP
NP:
K
77
N
NP:
A
131
S
NP:
I
136
L
NP:
V
197
I
NP:
R
236
K
NP:
T
472
A
NS1
NS1:
E
26
N
NS1:
L
33
I
NS1:
A
56
S
NS1:
V
60
A
NS1:
E
71
G
NS1:
V
82
A
NS1:
M
124
I
NS1:
N
127
T
NS1:
S
135
N
NS1:
D
139
G
NS1:
I
171
V
NS1:
V
180
I
NS1:
L
185
F
NS1:
K
221
E
NS1:
K
229
E
PA
PA:
N
142
K
PA:
I
155
M
PA:
K
158
R
PA:
S
208
T
PA:
K
222
N
PA:
K
256
Q
PA:
N
272
S
PA:
I
311
M
PA:
Y
321
C
PA:
D
382
E
PA:
D
396
E
PA:
N
409
S
PA:
I
421
V
PA:
Y
437
H
PA:
I
602
V
PA:
K
605
R
PA:
V
668
I
PA:
N
675
K
PA-X
PA-X:
N
142
K
PA-X:
I
155
M
PA-X:
K
158
R
PA-X:
E
209
G
PA-X:
V
212
A
PA-X:
N
222
T
PB1
PB1:
K
52
R
PB1:
V
113
A
PB1:
V
423
I
PB1:
L
576
I
PB1:
R
586
K
PB1:
A
587
T
PB1:
E
618
D
PB1:
V
644
I
PB1:
N
667
I
PB1:
*
758
Q
PB1-F2
PB1-F2:
E
4
G
PB1-F2:
Q
5
L
PB1-F2:
D
6
G
PB1-F2:
P
8
L
PB1-F2:
I
18
T
PB1-F2:
R
21
E
PB1-F2:
H
32
L
PB1-F2:
N
34
S
PB1-F2:
S
47
N
PB1-F2:
T
55
I
PB1-F2:
S
63
F
PB1-F2:
V
70
A
PB1-F2:
R
73
K
PB1-F2:
H
75
L
PB1-F2:
S
82
P
PB1-F2:
K
85
R
PB1-F2:
W
88
*
PB2
PB2:
A
106
T
PB2:
S
107
N
PB2:
I
147
T
PB2:
E
249
G
PB2:
K
340
R
PB2:
E
341
D
PB2:
K
353
R
PB2:
I
394
V
PB2:
I
451
V
PB2:
V
560
I
PB2:
I
588
T
PB2:
T
613
A
SigPep
SigPep:
T
3
A
SigPep:
Y
9
N
Deletions
N/A
Insertions
N/A
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