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Dengue 1
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Influenza A/H1N1pdm
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Influenza B/Victoria
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Dengue 1
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GS_00J21PY.1
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French_Polynesia/GS_00J21PY.1/2025-02-24
R. Klitting,
L. Pezzi,
N. Ayhan,
G. Piorkowski,
R. Amaral,
G. Grard,
G. Durand,
X. de Lamballerie,
M. Peden,
T. Canivez,
L. Bosio &
M. Geulen
CNR Arbovirus, CNR Arbovirus
Submission details
Submission ID
PZ666249.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-15 05:30:15 UTC
Date released
2026-07-15 05:30:44 UTC
Clade & Lineage
Clade
1V_E.1
Sample details
Collection country
French Polynesia
Collection date
2025-02-24
Isolate name
80538-1-0
INSDC
INSDC accession
PZ666249.1
NCBI release date
2026-07-14
NCBI update date
2026-07-14
Alignment and QC
Length
7010 (36.5%)
Total SNPs
296
Total unknown nucs
3097
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
T
171
G
T
241
C
T
244
C
C
253
T
T
274
C
G
302
A
G
349
A
A
355
G
C
358
A
A
363
G
T
397
C
C
439
T
C
443
T
C
451
A
G
466
A
C
481
T
T
505
C
A
523
G
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Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
G
70
S
C:
N
90
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
NS3
NS3:
E
43
D
NS3:
A
91
T
NS3:
A
112
T
NS3:
R
185
K
NS3:
V
221
I
NS3:
K
255
R
NS3:
V
384
I
NS3:
I
474
V
NS4A
NS4A:
Q
19
L
NS4A:
R
76
K
NS4A:
I
89
T
NS4B
NS4B:
H
17
Y
NS4B:
H
24
Q
NS4B:
A
27
T
NS4B:
I
48
V
prM
prM:
T
59
A
prM:
E
72
D
prM:
D
89
E
prM:
K
122
R
Deletions
N/A
Insertions
N/A
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