GS_00J1PMG.1

USA/GS_00J1PMG.1/2026-06-23
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ653930.1.seg1/PZ653929.1.seg3/PZ653924.1.seg4/PZ653927.1.seg5/PZ653926.1.seg6/PZ653925.1.seg7/PZ653928.1.seg8
Submitting group
Date submitted
2026-07-09 05:01:37 UTC
Date released
2026-07-09 05:02:04 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-07-07

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
Virginia
Collection date
2026-06-23
Isolate name
B/Virginia/GKISBBBH81494/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2356 (100%)
Total inserted nucs seg1
22
Total SNPs seg1
46
Length seg3
2283 (100%)
Total inserted nucs seg3
38
Total SNPs seg3
55
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
50
Length seg5
1817 (100%)
Total inserted nucs seg5
67
Total SNPs seg5
34
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
39
Length seg7
1155 (100%)
Total inserted nucs seg7
8
Total SNPs seg7
19
Length seg8
1072 (99.6%)
Total inserted nucs seg8
10
Total SNPs seg8
25

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • G197A
  • A200G
  • A359G
  • G383A
  • C434T
  • T522C
  • C528A
  • A563G
  • C746A
  • A827G
  • C854T
  • A908G
  • A950G
  • T962C
  • T968C
  • T995C
  • G1064A

seg3

  • T88C
  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • C693A
  • A771G
  • C813T
  • G867A
  • C897T
  • G906A
  • A935G
  • G936A
  • A987G

seg4

  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A484G
  • C509T
  • T510C
  • C528A

seg5

  • C3T
  • T46C
  • A55G
  • C178T
  • T213G
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • A763G

seg6

  • T9C
  • G76A
  • C125A
  • T134C
  • G139A
  • G194A
  • T212C
  • A358G
  • C394T
  • C399T
  • C486A
  • A504G
  • C519T
  • C534T
  • C636T
  • A660C
  • T714A
  • C849T

seg7

  • C33T
  • C46T
  • A83G
  • T113C
  • T125G
  • G316A
  • A419G
  • G482A
  • G500T
  • G521A
  • G536A
  • A566G
  • C656T
  • T787C
  • C808T
  • A874G
  • G889A
  • A919G
  • A967G

seg8

  • G6A
  • G26A
  • G76T
  • A118G
  • T163C
  • T166C
  • G190A
  • T341C
  • A352C
  • T355C
  • C358A
  • C375T
  • T391C
  • A406G
  • C419T
  • A447G
  • C604T
  • A610T
Deletions

seg4

562-570
Insertions

seg1

ins_0:GCCTTTA, ins_2334:GGCTCGTGTTTCTAC

seg3

ins_0:GCGTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAATGCTCGT

seg5

ins_0:GCATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTATCCTTACTAAACTTAATTGTTTCTGAAAAAT

seg7

ins_0:TTCTTA, ins_1147:AA

seg8

ins_1066:TAAAAATCCT

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:E183K
  • HA1:G184E
  • HA1:N197E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K

NA

  • NA:A26T
  • NA:P42Q
  • NA:I45T
  • NA:A47T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295K
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V399A
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:V62G
  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:T115M
  • NS1:L130F
  • NS1:D139G
  • NS1:H201Y

PA

  • PA:D231E
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:F709V
  • PA:N714S
  • PA:I723V

PB1

  • PB1:M65I
  • PB1:I187M
  • PB1:V474I
  • PB1:K573R
Deletions

HA1

HA1:162-164
Insertions
N/A