GS_00J1PLJ.1

USA/GS_00J1PLJ.1/2026-06-22
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ653923.1.seg1/PZ653920.1.seg4/PZ653921.1.seg5/PZ653922.1.seg8
Submitting group
Date submitted
2026-07-09 05:01:37 UTC
Date released
2026-07-09 05:02:04 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg4
INSDC accession seg5
INSDC accession seg8
NCBI release date
2026-07-07

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
USA
Collection subdivision level 1
Florida
Collection date
2026-06-22
Isolate name
B/Florida/GKISBBBJ42652/2026

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2351 (100%)
Total inserted nucs seg1
17
Total SNPs seg1
50
Length seg4
1847 (98.5%)
Total deleted nucs seg4
9
Total SNPs seg4
59
Length seg5
1810 (100%)
Total inserted nucs seg5
60
Total SNPs seg5
38
Length seg8
1061 (99.5%)
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C26T
  • C113T
  • G197A
  • A200G
  • A359G
  • G383A
  • C434T
  • G458A
  • T522C
  • A671G
  • C746A
  • A827G
  • C854T
  • T938C
  • A950G
  • T962C
  • T968C
  • T995C

seg4

  • G39A
  • C188T
  • C252A
  • C270T
  • C276A
  • G297A
  • G312T
  • A318G
  • A351G
  • C375T
  • C378T
  • A427G
  • A435G
  • C441T
  • T444C
  • T456C
  • G457A
  • A462T

seg5

  • C3T
  • T46C
  • A55G
  • A121G
  • C178T
  • A224G
  • A235G
  • G244A
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • T532C
  • C608T
  • A634G

seg8

  • G6A
  • G26A
  • A118G
  • T163C
  • T166C
  • G190A
  • T341C
  • A352C
  • T355C
  • C358A
  • T391C
  • C419T
  • A480G
  • C604T
  • A610T
  • C632T
  • G661A
  • T775C
Deletions

seg4

562-570
Insertions

seg1

ins_0:GCCTTTA, ins_2334:GGCTCGTGTT

seg5

ins_0:ATTTTCTTGTGAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:T37I
  • HA1:I117V
  • HA1:A127T
  • HA1:E128D
  • HA1:K136E
  • HA1:P144L
  • HA1:I146V
  • HA1:N150K
  • HA1:G184E
  • HA1:N197E
  • HA1:K203R
  • HA1:P241Q
  • HA1:R279K

NEP

  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:D150G
  • NS1:H201Y

PB1

  • PB1:M65I
  • PB1:V474I
Deletions

HA1

HA1:162-164
Insertions
N/A