GenSpectrum
Organisms
Influenza B/Victoria
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Influenza A/H1N1pdm
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Influenza B
Influenza B/Victoria
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Influenza B/Victoria
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GS_00J1NV1.1
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USA/GS_00J1NV1.1/2026-05-14
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ641310.1.seg1/PZ641311.1.seg3/PZ641312.1.seg4/PZ641313.1.seg5/PZ641314.1.seg6/PZ641315.1.seg7/PZ641316.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-07-09 05:01:37 UTC
Date released
2026-07-09 05:02:04 UTC
Clade
Clade HA
V1A.3a.2
Clade NA
B.7.1
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-05-14
Isolate name
B/California/LACPHL-INF02787/2026
INSDC
INSDC accession seg1
PZ641310.1
INSDC accession seg3
PZ641311.1
INSDC accession seg4
PZ641312.1
INSDC accession seg5
PZ641313.1
INSDC accession seg6
PZ641314.1
INSDC accession seg7
PZ641315.1
INSDC accession seg8
PZ641316.1
NCBI release date
2026-07-07
INSDC seg4
lineage_seg4
vic
Alignment and QC
Length seg1
2250 (96.4%)
Total SNPs seg1
41
Length seg3
2181 (97.1%)
Total SNPs seg3
44
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
48
Length seg5
1683 (96.1%)
Total ambiguous nucs seg5
1
Total SNPs seg5
29
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
36
Length seg7
1139 (99.3%)
Total SNPs seg7
21
Length seg8
1034 (97%)
Total SNPs seg8
24
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg1
C
113
T
A
200
G
T
219
C
G
251
A
G
338
A
G
383
A
T
386
C
C
434
T
T
522
C
C
528
A
C
746
A
A
764
G
C
830
T
C
854
T
A
950
G
T
962
C
T
968
C
C
1037
T
Show more
seg3
T
111
C
C
117
T
T
339
C
G
414
A
T
423
C
G
549
A
A
618
G
T
654
C
A
771
G
C
813
T
G
867
A
G
888
A
C
897
T
A
935
G
G
936
A
A
987
G
C
1006
T
A
1054
G
Show more
seg4
T
159
C
C
252
A
C
270
T
G
297
A
G
312
T
A
318
G
C
375
T
C
378
T
A
427
G
C
441
T
T
444
C
C
453
T
G
457
A
G
460
A
A
463
G
A
464
G
A
484
G
C
509
T
Show more
seg5
T
46
C
C
172
T
C
178
T
A
224
G
A
235
G
T
298
C
C
313
T
G
361
A
A
373
G
C
380
T
G
435
A
A
454
G
C
523
T
C
608
T
A
634
G
A
763
G
C
841
T
A
883
G
Show more
seg6
T
9
C
C
125
A
T
155
C
T
212
C
C
318
A
A
358
G
C
394
T
C
399
T
G
421
A
C
429
T
A
504
G
C
519
T
A
557
G
A
660
C
T
714
A
G
825
A
C
849
T
T
879
C
Show more
seg7
C
33
T
C
46
T
A
83
G
T
125
A
A
377
G
A
419
G
G
482
A
G
500
T
T
515
C
G
521
A
A
524
G
G
536
A
C
542
T
A
566
G
C
656
T
G
668
A
C
752
A
A
919
G
Show more
seg8
A
118
G
T
163
C
G
190
A
T
341
C
A
352
C
T
391
C
T
400
C
T
401
C
C
419
T
A
426
G
C
604
T
A
610
T
C
632
T
G
652
A
G
661
A
G
678
A
G
685
A
T
775
C
Show more
Deletions
seg4
562-570
Insertions
seg6
ins_0:ATGAACA
Amino acid substitutions
Substitutions called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
BM2
BM2:
L
2
I
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
G
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
A
154
E
HA1:
M
156
V
HA1:
G
184
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
R
279
K
HA2
HA2:
N
75
S
M1
M1:
T
15
I
NA
NA:
P
42
Q
NA:
L
52
S
NA:
V
71
A
NA:
I
120
V
NA:
G
141
R
NA:
K
186
R
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
G
378
E
NA:
Y
383
H
NA:
D
384
G
NA:
A
395
I
NA:
V
401
I
NEP
NEP:
L
30
S
NEP:
S
93
P
NEP:
V
115
I
NP
NP:
T
66
A
NP:
R
136
K
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
S
124
P
NS1:
L
130
F
NS1:
D
132
G
NS1:
H
201
Y
NS1:
S
216
N
PA
PA:
K
312
R
PA:
T
352
A
PA:
Y
458
F
PA:
S
530
T
PA:
S
547
G
PA:
F
709
I
PA:
N
714
S
PA:
S
719
L
PA:
I
723
V
PB1
PB1:
V
474
I
Deletions
HA1
HA1:162-164
Insertions
N/A
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