GS_00HVRAF.1

USA/GS_00HVRAF.1/2026-06-17
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ601496.1.seg4/PZ601623.1.seg6
Submitting group
Date submitted
2026-07-01 05:11:07 UTC
Date released
2026-07-01 05:12:15 UTC

Clade

Clade HA
K
Clade NA
None

Sample details

Collection country
USA
Collection subdivision level 1
Texas
Collection date
2026-06-17
Isolate name
A/Texas/USAFSAM-18071/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-06-30

INSDC seg4

subtype_seg4
H3

INSDC seg6

subtype_seg6
N2

Alignment and QC

Length seg4
1701 (97.9%)
Total SNPs seg4
125
Length seg6
1410 (98%)
Total SNPs seg6
21

Nucleotide mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

seg4

  • A24G
  • T42A
  • A50G
  • G56T
  • A71C
  • C72A
  • T74A
  • C77T
  • C89T
  • G155A
  • A163G
  • C189T
  • G199A
  • C203A
  • C208T
  • G213A
  • G214A
  • G222A

seg6

  • C40T
  • T59A
  • A64G
  • T100C
  • C349A
  • A428C
  • G436A
  • G456A
  • G517A
  • C797A
  • G826A
  • T1015C
  • A1044G
  • A1079G
  • A1160G
  • C1163T
  • G1206A
  • G1342A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

HA1

  • HA1:K2N
  • HA1:L3I
  • HA1:Q33R
  • HA1:S45N
  • HA1:T48I
  • HA1:G50K
  • HA1:D53N
  • HA1:E62G
  • HA1:K83E
  • HA1:K92R
  • HA1:Y94N
  • HA1:N96S
  • HA1:N121K
  • HA1:T131K
  • HA1:T135K
  • HA1:S138A
  • HA1:R142G
  • HA1:N145S

HA2

  • HA2:I32R
  • HA2:N46D
  • HA2:I77V
  • HA2:R121K
  • HA2:G155E
  • HA2:D160N
  • HA2:I193M
  • HA2:V200I

NA

  • NA:S18T
  • NA:N141H
  • NA:R150H
  • NA:H264N
  • NA:D346G
  • NA:N358D
  • NA:N385D
  • NA:P386S
  • NA:R400K
  • NA:H468R
  • NA:I469T

SigPep

  • SigPep:T3A
  • SigPep:Y9N
Deletions
N/A
Insertions
N/A