GS_00HVM6T.1

USA/GS_00HVM6T.1/2026-06-08
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ584133.1.seg1/PZ584134.1.seg2/PZ584132.1.seg3/PZ584127.1.seg4/PZ584130.1.seg5/PZ584129.1.seg6/PZ584128.1.seg7/PZ584131.1.seg8
Submitting group
Date submitted
2026-06-30 04:45:20 UTC
Date released
2026-06-30 04:45:56 UTC

Clade

Clade HA
V1A.3a.2
Clade NA
B.8

Sample details

Collection country
USA
Collection subdivision level 1
California
Collection date
2026-06-08
Isolate name
B/California/USAFSAM-18039/2026

Host

Host

INSDC

INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg7
INSDC accession seg8
NCBI release date
2026-06-26

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2259 (96.8%)
Total SNPs seg1
45
Length seg2
2313 (98.1%)
Total SNPs seg2
57
Length seg3
2181 (97.1%)
Total SNPs seg3
51
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
54
Length seg5
1683 (96.2%)
Total SNPs seg5
28
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
36
Length seg7
1076 (93.8%)
Total SNPs seg7
17
Length seg8
1027 (96.3%)
Total SNPs seg8
23

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • G197A
  • A200G
  • T233C
  • T276C
  • G383A
  • G455A
  • T522C
  • C528A
  • C746A
  • G776A
  • C854T
  • A950G
  • A951G
  • T962C
  • T968C
  • G1064A
  • G1094A

seg2

  • G12A
  • A54G
  • G81A
  • T165C
  • T168C
  • T171C
  • T174C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • A444G
  • G447A
  • G510A
  • C513T
  • A576G

seg3

  • T111C
  • C117T
  • C216T
  • T339C
  • A411G
  • G414A
  • T423C
  • A525C
  • G549A
  • A618G
  • G629A
  • T654C
  • A665G
  • A771G
  • A789G
  • C813T
  • G867A
  • C897T

seg4

  • C111T
  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
  • T510C

seg5

  • T46C
  • A55G
  • C178T
  • A224G
  • G244T
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • A763G
  • C841T
  • A883G
  • C1048T

seg6

  • T9C
  • C125A
  • T134C
  • G194A
  • G210A
  • T212C
  • C309T
  • A358G
  • C394T
  • C399T
  • A504G
  • C507T
  • C519T
  • C534T
  • A660C
  • T714A
  • C729A
  • C849T

seg7

  • C33T
  • C46T
  • A83G
  • T125A
  • C146T
  • G316A
  • A419G
  • T473C
  • G482A
  • G500T
  • G521A
  • G536A
  • C565T
  • A566G
  • C656T
  • A919G
  • A967G

seg8

  • T103C
  • A118G
  • T163C
  • G190A
  • A267G
  • T341C
  • A352C
  • A374G
  • T391C
  • C419T
  • G422A
  • G573A
  • T577C
  • C604T
  • A610T
  • C632T
  • G661A
  • G771A
Deletions

seg4

562-570
Insertions

seg6

ins_0:ATGAACA

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:A202E
  • HA1:K203R
  • HA1:S208P
  • HA1:S255P
  • HA1:I267V
  • HA1:R279K

M1

  • M1:T15I
  • M1:R105K
  • M1:T188M

NA

  • NA:P42Q
  • NA:I45T
  • NA:R65H
  • NA:V71A
  • NA:I120V
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:D384G
  • NA:A395V
  • NA:S397K
  • NA:V401I

NEP

  • NEP:V29I
  • NEP:L30S
  • NEP:S93P

NP

  • NP:I9M
  • NP:T66A
  • NP:V453A

NS1

  • NS1:K79R
  • NS1:Y104H
  • NS1:K107N
  • NS1:T115A
  • NS1:L130F
  • NS1:D131N
  • NS1:R181H
  • NS1:H201Y
  • NS1:R247H

PA

  • PA:R210K
  • PA:N222S
  • PA:K312R
  • PA:T352A
  • PA:S530T
  • PA:G708A
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:M65I
  • PB1:I317V
  • PB1:I462V
  • PB1:V474I
  • PB1:E748D

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
  • PB2:S630N
Deletions

HA1

HA1:162-164
Insertions
N/A