GS_00HVDXJ.1

USA/GS_00HVDXJ.1/2026-06-04
D. Dunn & P. C. Gauger

Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Submission details

Submission ID
PZ568950.1.seg4/PZ568951.1.seg6
Submitting group
Date submitted
2026-06-27 05:31:04 UTC
Date released
2026-06-27 05:31:41 UTC

Clade

Clade HA
C.1.9.3
Clade NA
D

Sample details

Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2026-06-04
Isolate name
A/swine/Iowa/A03690653/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-06-23

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg4
1701 (97.1%)
Total SNPs seg4
106
Length seg6
1410 (98.4%)
Total SNPs seg6
33

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg4

  • C42A
  • A47G
  • G57A
  • A119G
  • T161C
  • C164T
  • G188A
  • A231C
  • T280C
  • C293A
  • G311A
  • G322A
  • G338T
  • G360A
  • G416A
  • A429G
  • C443T
  • A456G

seg6

  • T109C
  • T128G
  • T272C
  • C404T
  • A428G
  • A449G
  • C452A
  • T491C
  • C518T
  • G607A
  • A764G
  • A785G
  • T799C
  • A818G
  • G881C
  • C884T
  • G887A
  • T890C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:K54Q
  • HA1:L70P
  • HA1:S74R
  • HA1:S84N
  • HA1:D97N
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:A135S
  • HA1:N156G
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:K169Q
  • HA1:S183P
  • HA1:S185I
  • HA1:A186T

HA2

  • HA2:E47K
  • HA2:I91V
  • HA2:K116E
  • HA2:S124N
  • HA2:E172K
  • HA2:E179D
  • HA2:I183T

NA

  • NA:V34A
  • NA:I40M
  • NA:S200N
  • NA:I264T
  • NA:V453I

SigPep

  • SigPep:L8M
  • SigPep:A13T
Deletions
N/A
Insertions
N/A