GS_00HV9GK.1

USA/GS_00HV9GK.1/2026-04-25
D. Dunn & P. C. Gauger

Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Submission details

Submission ID
PZ541026.1.seg4/PZ541027.1.seg6
Submitting group
Date submitted
2026-06-23 06:16:29 UTC
Date released
2026-06-23 06:17:10 UTC

Clade

Clade HA
D.3.1
Clade NA
D

Sample details

Collection country
USA
Collection subdivision level 1
Missouri
Collection date
2026-04-25
Isolate name
A/swine/Missouri/A03690568/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-06-16

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg4
1701 (97.1%)
Total SNPs seg4
110
Length seg6
1410 (98.4%)
Total SNPs seg6
22

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg4

  • A38G
  • C42A
  • A47G
  • G57A
  • A119G
  • T161C
  • C164T
  • G188A
  • A231C
  • C281A
  • C293G
  • C318T
  • G322A
  • G360A
  • G409A
  • G416A
  • A429G
  • C443T

seg6

  • C285T
  • A392G
  • T413C
  • C452A
  • G607A
  • G659A
  • C728A
  • G748A
  • A785G
  • T799C
  • A818G
  • C893T
  • G914T
  • C929T
  • G950A
  • T1016C
  • A1049G
  • C1187T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:R113K
  • HA1:T120A
  • HA1:N129D
  • HA1:K130N
  • HA1:P137S
  • HA1:A139D
  • HA1:S143G
  • HA1:S157L
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P

HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:S124H
  • HA2:I133T
  • HA2:E172K
  • HA2:E179D
  • HA2:V193A

NA

  • NA:P93S
  • NA:S200N
  • NA:S247N
  • NA:I264T
  • NA:M314I
  • NA:V453M

SigPep

  • SigPep:L8M
  • SigPep:A13T
Deletions
N/A
Insertions
N/A