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Influenza A/H1N1pdm
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GS_00HV973.1
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USA/GS_00HV973.1/2026-04-28
D. Dunn &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ540994.1.seg4/PZ540995.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-23 06:16:29 UTC
Date released
2026-06-23 06:17:10 UTC
Clade
Clade HA
unassigned
Clade NA
A.1.1
Sample details
Collection country
USA
Collection subdivision level 1
Nebraska
Collection date
2026-04-28
Isolate name
A/swine/Nebraska/A03690552/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ540994.1
INSDC accession seg6
PZ540995.1
NCBI release date
2026-06-16
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg4
1701 (97.1%)
Total SNPs seg4
110
Length seg6
1410 (98.4%)
Total SNPs seg6
58
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
A
47
G
G
57
A
G
63
A
A
66
G
A
146
G
C
164
T
A
170
G
G
179
A
G
210
A
C
215
A
C
222
A
C
284
T
A
290
G
G
292
A
C
293
A
C
318
T
G
322
A
T
324
C
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seg6
A
54
G
C
64
T
G
139
A
T
145
C
A
159
C
A
184
C
T
188
C
T
205
A
T
209
C
C
223
T
T
224
C
C
229
T
G
234
A
G
246
A
C
265
T
A
314
G
A
359
G
A
365
G
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Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
V
47
I
HA1:
H
51
N
HA1:
S
74
K
HA1:
P
83
S
HA1:
S
84
N
HA1:
S
85
P
HA1:
D
97
N
HA1:
K
119
N
HA1:
N
129
S
HA1:
P
137
S
HA1:
G
155
E
HA1:
N
156
D
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
V
173
I
HA1:
S
183
P
HA1:
S
185
T
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HA2
HA2:
V
18
I
HA2:
E
47
R
HA2:
K
75
R
HA2:
I
91
V
HA2:
S
124
T
HA2:
E
172
K
NA
NA:
T
16
A
NA:
T
19
M
NA:
S
44
N
NA:
I
46
T
NA:
K
51
Q
NA:
N
59
T
NA:
F
66
Y
NA:
T
72
I
NA:
S
74
F
NA:
A
76
T
NA:
V
80
M
NA:
A
86
V
NA:
I
117
M
NA:
I
149
V
NA:
R
220
K
NA:
K
222
N
NA:
A
232
V
NA:
V
234
I
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SigPep
SigPep:
A
13
T
SigPep:
A
15
T
SigPep:
N
16
D
Deletions
N/A
Insertions
N/A
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