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GS_00HV957.1
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USA/GS_00HV957.1/2026-04-24
D. Dunn &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ540988.1.seg4/PZ540989.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-23 06:16:29 UTC
Date released
2026-06-23 06:17:10 UTC
Clade
Clade HA
C.1.9.3
Clade NA
D.2
Sample details
Collection country
USA
Collection subdivision level 1
Indiana
Collection date
2026-04-24
Isolate name
A/swine/Indiana/A03690549/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ540988.1
INSDC accession seg6
PZ540989.1
NCBI release date
2026-06-16
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg4
1701 (97.1%)
Total SNPs seg4
111
Length seg6
1410 (98.4%)
Total SNPs seg6
20
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
G
36
A
C
42
A
A
47
G
G
57
A
A
60
G
C
64
T
C
93
T
A
119
G
T
161
C
C
164
T
G
179
A
G
188
A
G
205
A
G
210
A
G
221
A
A
231
C
A
240
G
C
293
A
Show more
seg6
A
144
G
G
163
A
C
215
T
C
232
T
C
452
A
T
500
C
G
607
A
T
662
C
G
667
A
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
T
1016
C
A
1049
G
C
1187
T
A
1193
G
G
1365
A
T
1403
C
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
H
8
Y
HA1:
R
45
K
HA1:
V
47
I
HA1:
K
54
Q
HA1:
I
57
V
HA1:
S
74
R
HA1:
S
84
N
HA1:
D
97
N
HA1:
E
112
G
HA1:
T
120
A
HA1:
N
129
D
HA1:
N
156
T
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
I
166
V
HA1:
K
169
Q
Show more
HA2
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
N
HA2:
I
133
V
HA2:
E
172
K
HA2:
E
179
D
HA2:
I
183
T
NA
NA:
I
46
V
NA:
S
52
N
NA:
A
75
V
NA:
S
200
N
NA:
R
220
K
NA:
I
264
T
NA:
V
453
M
SigPep
SigPep:
V
6
I
SigPep:
L
8
M
SigPep:
A
13
T
SigPep:
T
14
A
SigPep:
A
15
V
Deletions
N/A
Insertions
N/A
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