GS_00HV92D.1

USA/GS_00HV92D.1/2026-05-14
D. Dunn & P. C. Gauger

Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Submission details

Submission ID
PZ540940.1.seg4/PZ540941.1.seg6
Submitting group
Date submitted
2026-06-23 06:16:29 UTC
Date released
2026-06-23 06:17:10 UTC

Clade

Clade HA
unassigned

Sample details

Collection country
USA
Collection subdivision level 1
Indiana
Collection date
2026-05-14
Isolate name
A/swine/Indiana/A03690587/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-06-16

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg4
1701 (97.1%)
Total SNPs seg4
176

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg4

  • T41C
  • A49G
  • C61G
  • C62A
  • A71C
  • A86C
  • G98A
  • A110T
  • G117A
  • C129T
  • T161C
  • C164T
  • G174A
  • A178G
  • C185T
  • G205A
  • G210A
  • C215T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:V16I
  • HA1:D35N
  • HA1:K36R
  • HA1:R45K
  • HA1:V47I
  • HA1:N56S
  • HA1:I61L
  • HA1:S74R
  • HA1:P83S
  • HA1:S84K
  • HA1:D86E
  • HA1:D97N
  • HA1:S128T
  • HA1:N129D
  • HA1:A141T
  • HA1:K142N
  • HA1:K146R
  • HA1:I149V

HA2

  • HA2:V18I
  • HA2:N71S
  • HA2:K75R
  • HA2:T147M
  • HA2:V152I
  • HA2:A166S
  • HA2:I183V
  • HA2:V200I

SigPep

  • SigPep:Y10C
  • SigPep:T14R
Deletions
N/A
Insertions
N/A