GS_00HV90H.1

USA/GS_00HV90H.1/2026-05-15
D. Dunn & P. C. Gauger

Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Submission details

Submission ID
PZ540924.1.seg4/PZ540925.1.seg6
Submitting group
Date submitted
2026-06-23 06:16:29 UTC
Date released
2026-06-23 06:17:10 UTC

Clade

Clade NA
C.5.1.1

Sample details

Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2026-05-15
Isolate name
A/swine/Iowa/A03690579/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-06-16

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg6
1410 (98.4%)
Total SNPs seg6
27

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg6

  • C47T
  • A156G
  • C223T
  • C275T
  • T335C
  • T353C
  • C452A
  • T512G
  • C773T
  • A785G
  • A818G
  • C893T
  • G905T
  • G914T
  • G1025A
  • G1153A
  • A1164G
  • C1187T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

NA

  • NA:N50D
  • NA:T72I
  • NA:G382E
  • NA:K386E
  • NA:E432K
  • NA:V453M
  • NA:E462D
Deletions
N/A
Insertions
N/A