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Influenza A/H1N1pdm
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GS_00HTYZZ.1
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Slovakia/GS_00HTYZZ.1/2026-03-25
T. Sladecek
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava
Submission details
Submission ID
OZ478034.1.seg1/OZ478033.1.seg2/OZ478029.1.seg3/OZ478027.1.seg4/OZ478031.1.seg5/OZ478028.1.seg6/OZ478030.1.seg7/OZ478032.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-05 06:05:48 UTC
Date released
2026-06-05 06:06:24 UTC
INSDC
bioprojectAccession
PRJEB72255
biosampleAccession
SAMEA122739892
INSDC accession seg1
OZ478034.1
INSDC accession seg2
OZ478033.1
INSDC accession seg3
OZ478029.1
INSDC accession seg4
OZ478027.1
INSDC accession seg5
OZ478031.1
INSDC accession seg6
OZ478028.1
INSDC accession seg7
OZ478030.1
INSDC accession seg8
OZ478032.1
NCBI release date
2026-06-02
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
Slovakia
Collection date
2026-03-25
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2300 (100%)
Total inserted nucs seg1
20
Total SNPs seg1
86
Length seg2
2279 (99.4%)
Total inserted nucs seg2
18
Total SNPs seg2
80
Length seg3
2103 (94.8%)
Total inserted nucs seg3
45
Total SNPs seg3
74
Total unknown nucs seg3
18
Length seg4
1705 (97.3%)
Total SNPs seg4
112
Length seg5
1537 (100%)
Total inserted nucs seg5
40
Total SNPs seg5
59
Length seg6
1397 (97.5%)
Total SNPs seg6
23
Length seg7
995 (100%)
Total inserted nucs seg7
13
Total SNPs seg7
30
Length seg8
837 (97%)
Total SNPs seg8
34
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
A
18
G
G
66
A
A
90
C
A
96
G
A
108
G
A
132
G
A
138
G
G
161
A
A
174
G
T
201
C
A
225
G
A
226
T
C
242
T
A
243
G
C
261
T
C
285
A
A
291
G
C
309
T
Show more
seg2
C
27
T
G
42
A
A
111
G
A
159
G
G
168
A
G
180
A
C
192
T
C
201
T
T
207
A
T
210
C
T
222
C
G
225
A
C
297
T
G
312
A
T
324
A
G
354
A
A
366
G
C
447
T
Show more
seg3
C
99
T
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
G
298
A
G
423
A
G
477
A
G
498
A
G
504
A
G
597
A
A
612
G
G
618
A
G
663
A
C
670
T
A
673
T
T
687
C
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
C
443
T
Show more
seg5
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
T
402
C
Show more
seg6
A
33
G
T
68
C
A
225
C
C
301
T
T
347
C
C
401
T
C
452
A
G
607
A
A
785
G
T
799
C
A
818
G
G
881
T
C
893
T
G
914
T
C
929
T
A
1049
G
C
1187
T
A
1193
G
Show more
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
G
660
A
Show more
seg8
C
6
A
C
42
T
C
54
T
G
60
A
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
A
391
G
Show more
Deletions
N/A
Insertions
seg1
ins_0:AATATATTCAAT, ins_2280:TGTCGAAT
seg2
ins_2274:TGAATTTAACTTGTCCTT
seg3
ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAAAAAGTA
seg5
ins_0:GATAATCACTCAATGAGTGACATCGAAGCC, ins_1497:AGAAAAATAC
seg7
ins_0:TTAAAG, ins_982:AAAACTA
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
N
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
G
67
D
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
T
9
A
NA:
N
73
H
NA:
A
98
V
NA:
S
200
N
NA:
I
264
T
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PA
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
P
454
S
PB1:
M
646
V
PB1:
D
729
E
PB1:
K
757
R
PB2
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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