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Influenza A/H1N1pdm
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GS_00HTYX3.1
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Slovakia/GS_00HTYX3.1/2026-03-20
T. Sladecek
Science Park of Comenius University of Bratislava, Ilkovicova 8, 841 04 Bratislava
Submission details
Submission ID
OZ477991.1.seg1/OZ477990.1.seg2/OZ477986.1.seg3/OZ477984.1.seg4/OZ477988.1.seg5/OZ477985.1.seg6/OZ477987.1.seg7/OZ477989.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-05 06:05:48 UTC
Date released
2026-06-05 06:06:24 UTC
INSDC
bioprojectAccession
PRJEB72255
biosampleAccession
SAMEA122739890
INSDC accession seg1
OZ477991.1
INSDC accession seg2
OZ477990.1
INSDC accession seg3
OZ477986.1
INSDC accession seg4
OZ477984.1
INSDC accession seg5
OZ477988.1
INSDC accession seg6
OZ477985.1
INSDC accession seg7
OZ477987.1
INSDC accession seg8
OZ477989.1
NCBI release date
2026-06-02
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
Slovakia
Collection date
2026-03-20
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2291 (100%)
Total inserted nucs seg1
11
Total SNPs seg1
86
Length seg2
2285 (99.6%)
Total inserted nucs seg2
18
Total SNPs seg2
79
Total unknown nucs seg2
3
Length seg3
2124 (96.7%)
Total inserted nucs seg3
45
Total SNPs seg3
79
Length seg4
1745 (99.6%)
Total SNPs seg4
113
Length seg5
1523 (99.7%)
Total inserted nucs seg5
30
Total SNPs seg5
59
Length seg6
1418 (99%)
Total SNPs seg6
23
Length seg7
978 (99.3%)
Total inserted nucs seg7
3
Total SNPs seg7
30
Length seg8
847 (97%)
Total inserted nucs seg8
10
Total SNPs seg8
34
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
A
18
G
G
66
A
A
90
C
A
96
G
A
108
G
A
132
G
A
138
G
G
161
A
A
174
G
T
201
C
A
225
G
A
226
T
C
242
T
A
243
G
C
261
T
C
285
A
A
291
G
C
309
T
Show more
seg2
C
27
T
G
42
A
A
111
G
A
159
G
G
168
A
G
180
A
C
192
T
C
201
T
T
207
A
T
210
C
T
222
C
G
225
A
C
297
T
G
312
A
T
324
A
G
354
A
A
366
G
C
447
T
Show more
seg3
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
G
298
A
G
423
A
G
477
A
G
498
A
G
504
A
G
597
A
A
612
G
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
C
443
T
Show more
seg5
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
T
402
C
Show more
seg6
A
33
G
T
68
C
A
225
C
C
301
T
T
347
C
C
401
T
C
452
A
G
607
A
A
785
G
T
799
C
A
818
G
G
881
T
C
893
T
G
914
T
C
929
T
A
1049
G
C
1187
T
A
1193
G
Show more
seg7
G
48
A
G
75
A
T
123
C
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
G
660
A
Show more
seg8
C
6
A
C
42
T
C
54
T
G
60
A
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
A
391
G
Show more
Deletions
N/A
Insertions
seg1
ins_0:AAT, ins_2280:TGTCGAAT
seg2
ins_2274:TGAATTTAACTTGTCCTT
seg3
ins_2151:TTGTGGCAATGCTACTATTTGCTATCCATATTGTCCAAAAAAGTA
seg5
ins_0:GATAATCACTCAATGAGTGACATCGAAGCC
seg7
ins_0:AAG
seg8
ins_0:CAAAAACATA
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
N
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
R
18
K
M2:
D
21
G
M2:
S
23
N
M2:
I
28
T
NA
NA:
T
9
A
NA:
N
73
H
NA:
A
98
V
NA:
S
200
N
NA:
I
264
T
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
NS1:
N
205
S
PA
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
G
154
D
PB1:
V
200
I
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
P
454
S
PB1:
M
646
V
PB1:
D
729
E
PB1:
K
757
R
PB2
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
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