GenSpectrum
Organisms
Influenza B/Victoria
GenSpectrum
Organisms
Influenza B/Victoria
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Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
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Influenza B/Victoria
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GS_00HTY9E.1
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Download FASTA
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USA/GS_00HTY9E.1/2026-05-05
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ496911.1.seg1/PZ496912.1.seg2/PZ496913.1.seg3/PZ496914.1.seg4/PZ496915.1.seg5/PZ496916.1.seg6/PZ496917.1.seg7/PZ496918.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-05 05:27:14 UTC
Date released
2026-06-05 05:27:50 UTC
Clade
Clade HA
V1A.3a.2
Clade NA
B.7.1
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-05-05
Isolate name
B/California/LACPHL-INF02784/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
PZ496911.1
INSDC accession seg2
PZ496912.1
INSDC accession seg3
PZ496913.1
INSDC accession seg4
PZ496914.1
INSDC accession seg5
PZ496915.1
INSDC accession seg6
PZ496916.1
INSDC accession seg7
PZ496917.1
INSDC accession seg8
PZ496918.1
NCBI release date
2026-06-04
INSDC seg4
lineage_seg4
vic
Alignment and QC
Length seg1
2203 (62%)
Total SNPs seg1
27
Total unknown nucs seg1
756
Length seg2
2313 (95.5%)
Total SNPs seg2
43
Total unknown nucs seg2
61
Length seg3
2181 (97.1%)
Total SNPs seg3
46
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
46
Length seg5
1683 (95.9%)
Total ambiguous nucs seg5
4
Total SNPs seg5
32
Length seg6
1408 (99.9%)
Total ambiguous nucs seg6
1
Total inserted nucs seg6
7
Total SNPs seg6
39
Length seg7
1139 (99.3%)
Total SNPs seg7
24
Length seg8
1034 (97%)
Total SNPs seg8
24
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg1
C
113
T
A
200
G
T
219
C
G
251
A
C
1037
T
G
1064
A
G
1094
A
T
1100
C
G
1133
A
A
1172
G
T
1212
C
G
1217
A
T
1308
C
A
1406
G
T
1413
C
G
1422
A
G
1622
A
T
1647
C
Show more
seg2
G
12
A
A
54
G
G
81
A
T
171
C
T
240
C
T
300
A
T
330
C
C
342
T
A
405
G
G
441
A
G
447
A
C
513
T
A
576
G
T
586
C
A
594
G
A
705
G
G
768
A
A
801
G
Show more
seg3
T
111
C
C
117
T
C
124
T
T
339
C
G
414
A
T
423
C
G
549
A
A
618
G
T
654
C
A
771
G
C
813
T
G
867
A
G
888
A
C
897
T
A
935
G
G
936
A
A
987
G
C
1006
T
Show more
seg4
T
159
C
C
252
A
C
270
T
G
297
A
G
312
T
A
318
G
C
375
T
C
378
T
A
427
G
C
441
T
T
444
C
C
453
T
G
457
A
G
460
A
A
463
G
A
484
G
C
509
T
T
510
C
Show more
seg5
T
46
C
C
154
T
C
172
T
C
178
T
A
224
G
A
235
G
T
298
C
C
313
T
G
361
A
A
373
G
C
380
T
G
435
A
A
454
G
C
523
T
A
538
G
C
608
T
A
634
G
T
742
C
Show more
seg6
T
9
C
C
125
A
T
155
C
C
170
T
G
209
A
T
212
C
C
318
A
A
358
G
C
394
T
C
399
T
C
429
T
A
504
G
C
519
T
T
555
C
A
557
G
A
660
C
T
714
A
G
825
A
Show more
seg7
C
33
T
C
46
T
A
83
G
T
92
C
T
125
A
A
350
G
A
377
G
A
419
G
G
482
A
G
500
T
T
515
C
G
521
A
A
524
G
G
536
A
C
542
T
A
566
G
C
656
T
G
668
A
Show more
seg8
A
118
G
T
163
C
A
187
G
G
190
A
T
341
C
A
352
C
T
391
C
T
400
C
T
401
C
C
419
T
A
426
G
C
604
T
A
610
T
C
632
T
G
652
A
G
661
A
G
685
A
T
775
C
Show more
Deletions
seg4
562-570
Insertions
seg6
ins_0:ATGAACA
Amino acid substitutions
Substitutions called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
BM2
BM2:
I
31
M
BM2:
I
85
M
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
E
128
K
HA1:
N
129
D
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
A
154
E
HA1:
M
156
V
HA1:
G
184
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
R
279
K
M1
M1:
T
15
I
NA
NA:
P
42
Q
NA:
L
52
S
NA:
A
57
V
NA:
G
70
E
NA:
V
71
A
NA:
I
120
V
NA:
K
186
R
NA:
K
220
N
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
E
358
K
NA:
G
378
E
NA:
D
384
G
NA:
A
395
I
NA:
V
399
I
NA:
V
401
I
NEP
NEP:
L
30
S
NEP:
Q
40
R
NEP:
S
93
P
NEP:
V
115
I
NP
NP:
T
66
A
NP:
R
136
K
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
S
124
P
NS1:
L
130
F
NS1:
D
132
G
NS1:
H
201
Y
PA
PA:
K
312
R
PA:
T
352
A
PA:
Y
458
F
PA:
S
530
T
PA:
S
547
G
PA:
F
709
I
PA:
N
714
S
PA:
I
723
V
PB1
PB1:
V
474
I
PB1:
I
749
V
PB2
PB2:
I
492
T
PB2:
D
533
G
PB2:
X
582
E
Deletions
HA1
HA1:162-164
Insertions
N/A
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