GS_00HTXY2.1

USA/GS_00HTXY2.1/2026-05-21
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Perimeter

Submission details

Submission ID
PZ488014.1.seg1/PZ488015.1.seg2/PZ488013.1.seg3/PZ488009.1.seg4/PZ488011.1.seg5/PZ488010.1.seg6/PZ488012.1.seg8
Submitting group
Date submitted
2026-06-05 05:27:14 UTC
Date released
2026-06-05 05:27:50 UTC

INSDC

bioprojectAccession
INSDC accession seg1
INSDC accession seg2
INSDC accession seg3
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg8
NCBI release date
2026-06-02

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-05-21
Isolate name
B/New York/GKISBBBJ05127/2026

Host

Host

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg1
2356 (100%)
Total inserted nucs seg1
22
Total SNPs seg1
40
Length seg2
2367 (100%)
Total inserted nucs seg2
9
Total SNPs seg2
47
Length seg3
2299 (100%)
Total inserted nucs seg3
54
Total SNPs seg3
45
Length seg4
1862 (99.3%)
Total deleted nucs seg4
9
Total SNPs seg4
50
Length seg5
1817 (100%)
Total inserted nucs seg5
67
Total SNPs seg5
34
Length seg6
1537 (100%)
Total inserted nucs seg6
136
Total SNPs seg6
36
Length seg8
1081 (99.6%)
Total inserted nucs seg8
19
Total SNPs seg8
33

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg1

  • C113T
  • A164C
  • A200G
  • T219C
  • G251A
  • G383A
  • T386C
  • C434T
  • C528A
  • C746A
  • A764G
  • C830T
  • C854T
  • A950G
  • T962C
  • T968C
  • T1016C
  • C1037T

seg2

  • G12A
  • A54G
  • G81A
  • T171C
  • T240C
  • T300A
  • T330C
  • C342T
  • A405G
  • G441A
  • G447A
  • C513T
  • A576G
  • T586C
  • A594G
  • T687A
  • A705G
  • G768A

seg3

  • T111C
  • C117T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A771G
  • C813T
  • G867A
  • G888A
  • C897T
  • A935G
  • G936A
  • A987G
  • C1006T
  • A1054G

seg4

  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
  • T510C

seg5

  • C3T
  • T46C
  • C172T
  • C178T
  • G198A
  • A224G
  • A235G
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • G435A
  • A454G
  • C523T
  • C608T
  • A634G
  • T742C

seg6

  • T9C
  • C125A
  • T155C
  • T212C
  • C226T
  • C318A
  • A358G
  • C394T
  • C399T
  • C429T
  • A504G
  • C519T
  • G543A
  • A557G
  • A660C
  • T714A
  • G825A
  • C849T

seg8

  • G26A
  • A118G
  • T163C
  • G190A
  • A199G
  • A336G
  • T341C
  • A347G
  • A352C
  • T371A
  • T391C
  • T400C
  • T401C
  • C419T
  • A426G
  • T451C
  • A492G
  • A520G
Deletions

seg4

562-570
Insertions

seg1

ins_0:GCCTTTA, ins_2334:GGCTCGTGTTTCTAC

seg2

ins_0:GTTTTC, ins_2358:AAT

seg3

ins_0:GAAGCGGTGCGTTTGATTTATCATA, ins_2241:AGAAAC, ins_2245:ATCAAAAATGCTCGTGTTTCTAC

seg5

ins_0:GCATTTTCTTGTAAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAAT

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAAATGAACA, ins_1401:TAGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTACTAAACTTAATTGTTTCTGAAAAATGCTCTTGT

seg8

ins_1066:TAAAAATCCTCTTGTTACT

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:M156V
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

NA

  • NA:P42Q
  • NA:L52S
  • NA:V71A
  • NA:P76S
  • NA:I120V
  • NA:K186R
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I

NEP

  • NEP:T24N
  • NEP:V29A
  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

NP

  • NP:S57N
  • NP:T66A
  • NP:R136K
  • NP:V453A

NS1

  • NS1:E102G
  • NS1:Y104H
  • NS1:M106V
  • NS1:K107N
  • NS1:C114S
  • NS1:S124P
  • NS1:L130F
  • NS1:D132G
  • NS1:K154R
  • NS1:H201Y
  • NS1:N242K

PA

  • PA:K312R
  • PA:T352A
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
  • PA:I723V

PB1

  • PB1:K54N
  • PB1:V474I

PB2

  • PB2:X303I
  • PB2:I492T
  • PB2:X582E
Deletions

HA1

HA1:162-164
Insertions
N/A