GenSpectrum
Organisms
Influenza B/Victoria
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Influenza B/Victoria
|
Browse data
Select organism section
Browse data
GS_00HTLEG.1
Download
Download FASTA
Download metadata TSV
USA/GS_00HTLEG.1/2026-04-22
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Submission details
Submission ID
PZ478239.1.seg1/PZ478240.1.seg2/PZ478241.1.seg3/PZ478242.1.seg4/PZ478243.1.seg5/PZ478244.1.seg6/PZ478245.1.seg7/PZ478246.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-06-02 06:19:43 UTC
Date released
2026-06-02 06:20:18 UTC
Clade
Clade HA
V1A.3a.2
Clade NA
B.8
Sample details
Collection country
USA
Collection subdivision level 1
California
Collection date
2026-04-22
Isolate name
B/California/LACPHL-INF02779/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
PZ478239.1
INSDC accession seg2
PZ478240.1
INSDC accession seg3
PZ478241.1
INSDC accession seg4
PZ478242.1
INSDC accession seg5
PZ478243.1
INSDC accession seg6
PZ478244.1
INSDC accession seg7
PZ478245.1
INSDC accession seg8
PZ478246.1
NCBI release date
2026-06-01
INSDC seg4
lineage_seg4
vic
Alignment and QC
Length seg1
1446 (61.9%)
Total ambiguous nucs seg1
1
Total SNPs seg1
38
Length seg2
2273 (93.1%)
Total ambiguous nucs seg2
1
Total SNPs seg2
54
Total unknown nucs seg2
77
Length seg3
2181 (97.1%)
Total SNPs seg3
52
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
53
Length seg5
1683 (96.1%)
Total ambiguous nucs seg5
1
Total SNPs seg5
36
Length seg6
1408 (100%)
Total inserted nucs seg6
7
Total SNPs seg6
38
Length seg7
1081 (94%)
Total ambiguous nucs seg7
2
Total SNPs seg7
19
Total unknown nucs seg7
1
Length seg8
1034 (97%)
Total SNPs seg8
21
Nucleotide mutations
Mutations called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
seg1
A
827
G
G
836
A
C
854
T
A
908
G
A
950
G
T
962
C
T
968
C
T
995
C
T
1053
C
G
1064
A
G
1094
A
T
1100
C
G
1133
A
A
1172
G
G
1175
A
T
1212
C
G
1217
A
G
1223
A
Show more
seg2
A
54
G
G
81
A
T
165
C
T
168
C
T
171
A
T
174
C
C
207
T
T
240
C
T
300
A
T
330
C
C
342
T
A
405
G
G
441
A
G
447
A
G
510
A
C
513
T
A
576
G
A
594
G
Show more
seg3
T
88
C
T
111
C
C
117
T
T
339
C
G
414
A
T
423
C
G
549
A
A
618
G
T
654
C
A
771
G
C
813
T
A
828
G
G
867
A
G
906
A
A
935
G
G
936
A
A
987
G
T
993
C
Show more
seg4
C
252
A
C
270
T
G
297
A
G
312
T
A
318
G
A
351
G
C
375
T
C
378
T
T
402
C
A
427
G
A
435
G
C
441
T
T
444
C
T
456
C
G
457
A
A
484
G
C
509
T
T
510
C
Show more
seg5
T
46
C
A
55
G
C
178
T
T
213
G
A
224
G
A
235
G
G
244
A
G
250
A
T
298
C
C
313
T
G
361
A
A
373
G
C
380
T
C
433
T
A
454
G
C
523
T
C
608
T
A
634
G
Show more
seg6
T
9
C
C
125
A
T
134
C
G
194
A
T
212
C
A
358
G
C
394
T
C
399
T
A
504
G
C
519
T
C
534
T
G
537
A
A
660
C
T
714
A
C
849
T
A
853
G
T
879
C
T
885
G
Show more
seg7
A
83
G
T
113
C
T
125
A
G
262
A
G
316
A
A
419
G
G
482
A
G
500
T
G
521
A
G
536
A
A
566
G
C
656
T
A
760
G
T
787
C
C
808
T
A
919
G
A
952
G
A
967
G
C
1024
A
seg8
A
118
G
T
163
C
T
166
C
C
176
T
G
190
A
T
341
C
A
352
C
T
355
C
C
358
A
T
391
C
C
419
T
C
586
A
C
604
T
A
610
T
C
632
T
G
661
A
T
775
C
C
882
T
Show more
Deletions
seg4
562-570
Insertions
seg6
ins_0:ATGAACA
Amino acid substitutions
Substitutions called relative to the
CY115157.1
,
CY115158.1
,
CY115156.1
,
KX058884.1
,
CY115154.1
,
CY073894.1
,
CY115152.1
&
CY115155.1
references
Substitutions
HA1
HA1:
I
117
V
HA1:
A
127
T
HA1:
K
136
E
HA1:
P
144
L
HA1:
N
150
K
HA1:
A
154
T
HA1:
T
182
K
HA1:
G
184
E
HA1:
N
197
E
HA1:
A
199
T
HA1:
K
203
R
HA1:
R
279
K
HA2
HA2:
D
179
G
M1
M1:
G
87
E
M1:
R
105
K
NA
NA:
P
42
Q
NA:
I
45
T
NA:
R
65
H
NA:
V
71
A
NA:
I
120
V
NA:
K
220
N
NA:
K
285
E
NA:
S
295
R
NA:
N
340
D
NA:
K
343
E
NA:
G
346
R
NA:
E
358
K
NA:
D
384
G
NA:
A
395
V
NA:
S
397
K
NA:
V
401
I
NEP
NEP:
L
30
S
NEP:
S
93
P
NP
NP:
I
9
M
NP:
V
62
G
NP:
T
66
A
NP:
K
272
R
NP:
V
453
A
NS1
NS1:
Y
104
H
NS1:
K
107
N
NS1:
L
130
F
NS1:
H
201
Y
PA
PA:
K
312
R
PA:
T
352
A
PA:
C
387
Y
PA:
S
530
T
PA:
F
709
V
PA:
N
714
S
PA:
I
723
V
PB1
PB1:
V
474
I
PB1:
K
573
R
PB2
PB2:
N
56
K
PB2:
X
303
I
PB2:
I
492
T
PB2:
X
582
E
PB2:
S
630
N
Deletions
HA1
HA1:162-164
Insertions
N/A
Load sequences