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Influenza A/H1N1pdm
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GS_00HT1JS.1
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USA/GS_00HT1JS.1/2026-05-01
R. Hoover,
N. Greer,
M. Scully,
D. Toy &
N. Hayward
Delaware Public Health Lab, Sequencing & Bioinformatics
Submission details
Submission ID
PZ468651.1.seg1/PZ468652.1.seg2/PZ468653.1.seg3/PZ468654.1.seg4/PZ468655.1.seg5/PZ468656.1.seg6/PZ468657.1.seg7/PZ468658.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-30 05:35:11 UTC
Date released
2026-05-30 05:35:57 UTC
INSDC
bioprojectAccession
PRJNA1446889
INSDC accession seg1
PZ468651.1
INSDC accession seg2
PZ468652.1
INSDC accession seg3
PZ468653.1
INSDC accession seg4
PZ468654.1
INSDC accession seg5
PZ468655.1
INSDC accession seg6
PZ468656.1
INSDC accession seg7
PZ468657.1
INSDC accession seg8
PZ468658.1
NCBI release date
2026-05-29
Clade
Clade HA
D.3.1
Clade NA
D.1
Sample details
Collection country
USA
Collection subdivision level 1
MD
Collection date
2026-05-01
Isolate name
A/MD/DE-DPHL-0115/2026
Host
Host
Homo sapiens
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2280 (100%)
Total SNPs seg1
90
Length seg2
2250 (84.5%)
Total deleted nucs seg2
24
Total SNPs seg2
64
Total unknown nucs seg2
353
Length seg3
2151 (100%)
Total SNPs seg3
87
Length seg4
1701 (97.1%)
Total SNPs seg4
112
Length seg5
1497 (100%)
Total SNPs seg5
60
Length seg6
1410 (98.4%)
Total SNPs seg6
24
Length seg7
982 (100%)
Total SNPs seg7
26
Length seg8
863 (100%)
Total SNPs seg8
37
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
A
18
G
G
66
A
A
90
C
A
96
G
A
108
G
A
132
G
A
138
G
G
161
A
A
174
G
T
201
C
A
225
G
A
226
T
C
242
T
A
243
G
C
261
T
C
285
A
A
291
G
C
309
T
Show more
seg2
A
63
G
T
81
C
A
159
G
G
168
A
G
180
A
C
192
A
G
204
A
T
207
A
T
210
C
T
222
C
G
225
A
T
246
C
A
627
G
A
630
G
T
750
C
C
844
T
C
885
T
G
924
A
Show more
seg3
G
40
A
R
53
A
A
56
G
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
C
153
T
C
162
T
C
165
T
G
187
A
A
192
G
G
204
A
C
222
T
G
298
A
G
423
A
Show more
seg4
A
38
G
C
42
A
A
47
G
G
57
A
A
119
G
C
155
T
T
161
C
C
164
T
G
188
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
G
409
A
G
416
A
A
429
G
Show more
seg5
A
33
G
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
C
303
T
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
Show more
seg6
C
20
T
C
55
T
C
285
T
C
452
A
C
571
T
G
607
A
A
785
G
T
799
C
A
818
G
G
867
A
C
874
T
C
893
T
G
914
T
T
923
C
T
1023
C
A
1049
G
G
1154
A
C
1187
T
Show more
seg7
C
42
A
G
75
A
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
G
342
A
C
375
A
C
390
T
T
432
C
G
441
T
G
492
A
C
507
A
A
574
G
C
622
A
G
660
A
Show more
seg8
C
6
A
C
42
T
C
54
T
T
99
C
C
108
A
T
159
C
G
163
A
C
192
T
C
204
T
A
226
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
A
367
G
A
375
T
G
385
A
Show more
Deletions
seg2
31-54
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
A
139
D
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
M
192
V
M1:
Q
208
K
M1:
K
230
R
M2
M2:
D
21
G
M2:
S
23
N
NA
NA:
T
16
I
NA:
P
93
S
NA:
T
188
I
NA:
S
200
N
NA:
I
264
T
NA:
E
287
K
NA:
T
289
I
NA:
S
339
P
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
M
14
T
NEP:
N
29
S
NEP:
T
48
A
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
V
425
I
NP:
V
444
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
76
S
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
V
129
I
NS1:
K
131
E
NS1:
A
155
T
NS1:
P
164
S
NS1:
V
180
I
NS1:
N
205
S
PA
PA:
V
14
I
PA:
X
18
E
PA:
K
19
R
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
V
14
I
PA-X:
X
18
E
PA-X:
K
19
R
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB1
PB1:
K
386
R
PB1:
I
397
M
PB1:
I
435
T
PB1:
K
757
R
PB2
PB2:
R
54
K
PB2:
T
76
S
PB2:
T
81
M
PB2:
K
187
R
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
I
559
M
PB2:
V
667
I
PB2:
T
676
A
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
PB1
PB1:11-18
Insertions
N/A
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