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GS_00HSRBK.1
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USA/GS_00HSRBK.1/2026-04-17
C. Dohrn,
D. Dunn &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ461095.1.seg4/PZ461096.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-28 05:27:48 UTC
Date released
2026-05-28 05:29:18 UTC
Clade
Clade HA
G.1.1
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Illinois
Collection date
2026-04-17
Isolate name
A/swine/Illinois/A03690510/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ461095.1
INSDC accession seg6
PZ461096.1
NCBI release date
2026-05-27
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.6%)
Total ambiguous nucs seg4
5
Total SNPs seg4
124
Length seg6
1410 (98%)
Total SNPs seg6
173
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
T
42
A
G
56
T
T
58
C
C
72
A
T
74
A
C
77
T
C
89
T
A
128
G
G
155
A
A
163
G
T
173
G
C
189
T
G
199
A
C
203
A
C
208
T
G
214
A
A
223
G
A
250
G
Show more
seg6
C
20
A
G
25
A
G
34
A
C
54
T
A
55
C
T
59
G
C
70
T
T
74
C
C
76
T
C
91
T
A
95
G
A
97
G
T
110
C
T
115
C
T
125
C
A
130
T
T
132
G
C
136
T
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Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
Q
33
R
HA1:
S
45
N
HA1:
T
48
I
HA1:
G
50
E
HA1:
D
53
G
HA1:
E
62
G
HA1:
K
83
E
HA1:
K
92
R
HA1:
Y
94
N
HA1:
N
121
E
HA1:
D
122
N
HA1:
T
131
K
HA1:
N
133
D
HA1:
S
138
A
HA1:
K
140
I
HA1:
R
142
G
HA1:
N
144
S
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HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
I
77
V
HA2:
R
121
K
HA2:
G
155
E
HA2:
D
160
N
HA2:
K
174
R
HA2:
I
193
M
HA2:
V
200
I
NA
NA:
Q
5
K
NA:
T
16
I
NA:
S
18
A
NA:
F
23
L
NA:
I
30
V
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
P
45
S
NA:
N
47
S
NA:
L
52
F
NA:
I
62
K
NA:
I
73
L
NA:
N
86
I
NA:
G
93
N
NA:
I
106
V
NA:
L
126
F
NA:
K
128
R
Show more
SigPep
SigPep:
Y
9
N
SigPep:
V
14
A
Deletions
N/A
Insertions
N/A
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