GS_00HSR5X.1

USA/GS_00HSR5X.1/2026-04-14
C. Dohrn, D. Dunn & P. C. Gauger

Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Submission details

Submission ID
PZ461059.1.seg4/PZ461060.1.seg6
Submitting group
Date submitted
2026-05-28 05:27:48 UTC
Date released
2026-05-28 05:29:18 UTC

Clade

Clade HA
K
Clade NA
None

Sample details

Collection country
USA
Collection subdivision level 1
Oklahoma
Collection date
2026-04-14
Isolate name
A/swine/Oklahoma/A03690492/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-05-27

INSDC seg4

subtype_seg4
H3

INSDC seg6

subtype_seg6
N2

Alignment and QC

Length seg4
1701 (97.9%)
Total SNPs seg4
123
Length seg6
1410 (98%)
Total SNPs seg6
16

Nucleotide mutations

Mutations called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

seg4

  • A24G
  • T42A
  • G56T
  • A71C
  • C72A
  • T74A
  • C77T
  • C89T
  • G155A
  • C189T
  • G199A
  • C203A
  • C208T
  • G213A
  • G214A
  • G222A
  • A250G
  • A251G

seg6

  • C40T
  • A64G
  • T100C
  • C349A
  • G456A
  • G517A
  • C797A
  • T1015C
  • A1044G
  • A1079G
  • C1108T
  • A1160G
  • G1206A
  • G1342A
  • G1390A
  • A1410C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_007373.1, NC_007372.1, NC_007371.1, CY163680.1, NC_007369.1, CY114383.1, NC_007367.1 & NC_007370.1 references

Substitutions

HA1

  • HA1:K2N
  • HA1:L3I
  • HA1:S45N
  • HA1:T48I
  • HA1:G50K
  • HA1:D53N
  • HA1:E62G
  • HA1:K83E
  • HA1:K92R
  • HA1:Y94N
  • HA1:N96S
  • HA1:N121K
  • HA1:S124N
  • HA1:T131K
  • HA1:T135K
  • HA1:S138A
  • HA1:R142G
  • HA1:N145S

HA2

  • HA2:I32R
  • HA2:N46D
  • HA2:I77V
  • HA2:R121K
  • HA2:G155E
  • HA2:D160N
  • HA2:I193M
  • HA2:V200I

NA

  • NA:R150H
  • NA:H264N
  • NA:D346G
  • NA:N358D
  • NA:N385D
  • NA:R400K
  • NA:H468P

SigPep

  • SigPep:T3A
  • SigPep:Y9N
Deletions
N/A
Insertions
N/A