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GS_00HSQZ9.1
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USA/GS_00HSQZ9.1/2026-04-14
C. Dohrn,
D. Dunn &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ461077.1.seg4/PZ461078.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-28 05:25:22 UTC
Date released
2026-05-28 05:25:56 UTC
Clade
Clade HA
unassigned
Clade NA
B.2
Sample details
Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2026-04-14
Isolate name
A/swine/Iowa/A03690501/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ461077.1
INSDC accession seg6
PZ461078.1
NCBI release date
2026-05-27
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg4
1695 (97.1%)
Total deleted nucs seg4
6
Total SNPs seg4
270
Length seg6
1410 (98.4%)
Total SNPs seg6
53
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
A
35
G
G
36
T
A
38
G
T
41
C
C
42
T
T
48
C
T
54
C
T
78
A
A
110
T
C
113
T
T
116
A
A
119
T
C
122
T
A
128
G
C
129
T
A
134
G
C
155
T
T
161
C
Show more
seg6
C
35
A
G
39
A
T
41
C
C
64
T
A
80
G
G
108
A
G
130
A
G
163
A
T
170
C
T
205
A
C
221
T
T
224
C
C
235
T
G
246
A
G
255
C
G
257
A
A
263
G
C
277
T
Show more
Deletions
seg4
453-458
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
L
3
I
HA1:
R
45
G
HA1:
V
47
K
HA1:
H
51
Y
HA1:
I
61
L
HA1:
L
70
I
HA1:
S
71
L
HA1:
A
73
V
HA1:
S
84
N
HA1:
D
94
S
HA1:
I
96
T
HA1:
D
97
N
HA1:
R
113
K
HA1:
K
119
I
HA1:
T
120
E
HA1:
S
128
Y
HA1:
N
129
E
HA1:
K
130
T
Show more
HA2
HA2:
E
29
D
HA2:
L
38
Q
HA2:
N
43
R
HA2:
E
47
G
HA2:
H
72
N
HA2:
K
75
R
HA2:
K
82
R
HA2:
I
91
V
HA2:
Y
110
F
HA2:
S
124
N
HA2:
K
127
R
HA2:
E
150
D
HA2:
P
160
L
HA2:
A
166
S
HA2:
E
179
D
HA2:
I
183
V
HA2:
V
200
L
HA2:
I
206
L
NA
NA:
G
11
S
NA:
T
19
M
NA:
V
34
I
NA:
G
41
E
NA:
S
52
N
NA:
F
66
Y
NA:
A
76
V
NA:
V
80
M
NA:
V
83
L
NA:
S
90
F
NA:
L
91
F
NA:
I
149
V
NA:
S
200
N
NA:
K
222
N
NA:
V
234
I
NA:
S
366
N
NA:
T
381
I
NA:
E
432
K
SigPep
SigPep:
V
6
L
SigPep:
Y
10
H
SigPep:
F
12
L
Deletions
HA1
HA1:126, HA1:127
Insertions
N/A
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