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GS_00HS8ND.1
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USA/GS_00HS8ND.1/2026-03-26
D. Dunn &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ436995.1.seg4/PZ436996.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-21 05:16:40 UTC
Date released
2026-05-21 05:17:15 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Minnesota
Collection date
2026-03-26
Isolate name
A/swine/Minnesota/A02759303/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ436995.1
INSDC accession seg6
PZ436996.1
NCBI release date
2026-05-20
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.6%)
Total ambiguous nucs seg4
4
Total SNPs seg4
134
Total unknown nucs seg4
1
Length seg6
1410 (98%)
Total SNPs seg6
184
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
G
23
A
T
26
C
A
27
G
C
34
T
T
42
C
C
44
A
G
52
A
T
60
C
A
80
T
G
91
A
C
94
T
G
113
A
A
125
G
A
140
G
A
156
G
A
157
G
T
185
C
G
199
A
Show more
seg6
G
34
A
C
54
T
A
55
C
T
59
G
T
74
C
C
76
T
A
83
G
A
95
G
G
104
A
T
117
A
A
124
G
T
125
C
T
127
C
A
129
G
A
130
T
T
132
G
A
145
G
T
148
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
S
9
N
HA1:
T
10
M
HA1:
I
25
M
HA1:
N
31
G
HA1:
S
45
N
HA1:
S
46
F
HA1:
G
49
E
HA1:
G
50
E
HA1:
D
53
N
HA1:
H
56
Y
HA1:
E
62
G
HA1:
K
82
N
HA1:
Y
94
H
HA1:
N
96
D
HA1:
D
122
K
HA1:
R
142
K
HA1:
N
144
S
HA1:
K
158
N
Show more
HA2
HA2:
F
9
Y
HA2:
E
15
K
HA2:
I
32
R
HA2:
N
46
D
HA2:
L
102
M
HA2:
R
121
K
HA2:
D
164
N
HA2:
G
181
E
HA2:
I
193
M
HA2:
R
216
K
NA
NA:
T
16
I
NA:
S
18
A
NA:
F
23
L
NA:
I
26
V
NA:
I
30
V
NA:
V
33
I
NA:
F
37
Y
NA:
Y
40
H
NA:
E
41
G
NA:
F
42
C
NA:
R
60
K
NA:
I
62
K
NA:
I
73
V
NA:
P
81
T
NA:
G
93
N
NA:
T
95
A
NA:
L
140
I
NA:
V
143
G
Show more
SigPep
SigPep:
I
4
V
SigPep:
A
6
V
SigPep:
Y
9
Q
SigPep:
C
12
Y
SigPep:
F
15
L
Deletions
N/A
Insertions
N/A
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