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GS_00HRX9K.1
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USA/GS_00HRX9K.1/2026-04-07
D. Dunn &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ428720.1.seg4/PZ428721.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-20 05:12:28 UTC
Date released
2026-05-20 05:13:36 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Nebraska
Collection date
2026-04-07
Isolate name
A/swine/Nebraska/A03690437/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ428720.1
INSDC accession seg6
PZ428721.1
NCBI release date
2026-05-19
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Total SNPs seg4
196
Length seg6
1410 (98%)
Total SNPs seg6
162
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
G
23
A
A
27
G
G
38
T
A
43
G
G
57
A
C
62
T
A
71
G
T
74
C
C
75
T
C
77
A
A
82
G
C
94
T
T
110
G
G
113
A
A
125
G
G
137
A
A
138
T
A
140
G
Show more
seg6
G
34
A
C
54
T
A
55
T
T
59
G
C
70
T
T
74
C
C
76
T
A
95
G
C
108
A
C
122
A
A
124
G
T
125
A
A
126
T
T
132
A
C
141
T
C
144
T
T
148
C
T
156
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
P
4
S
HA1:
N
6
S
HA1:
T
10
M
HA1:
I
25
L
HA1:
N
31
D
HA1:
G
50
R
HA1:
D
53
N
HA1:
E
62
K
HA1:
Q
75
H
HA1:
G
78
D
HA1:
K
83
E
HA1:
K
92
T
HA1:
D
101
Y
HA1:
S
107
T
HA1:
L
111
I
HA1:
T
117
S
HA1:
E
119
K
HA1:
N
121
T
Show more
HA2
HA2:
I
32
T
HA2:
N
49
T
HA2:
L
55
V
HA2:
G
57
K
HA2:
N
116
S
HA2:
K
124
R
HA2:
A
147
T
HA2:
G
150
E
HA2:
D
160
N
HA2:
V
161
I
HA2:
D
164
N
HA2:
E
177
Q
HA2:
K
179
N
HA2:
I
193
T
HA2:
V
200
F
HA2:
A
201
V
NA
NA:
T
16
I
NA:
S
18
A
NA:
F
23
L
NA:
I
30
V
NA:
T
34
K
NA:
Q
39
K
NA:
Y
40
I
NA:
F
42
Y
NA:
P
45
L
NA:
P
46
L
NA:
V
50
A
NA:
E
54
G
NA:
I
62
T
NA:
N
86
D
NA:
G
93
N
NA:
L
126
P
NA:
D
127
E
NA:
V
143
G
Show more
SigPep
SigPep:
I
4
V
SigPep:
L
7
F
SigPep:
Y
9
C
SigPep:
V
14
I
Deletions
N/A
Insertions
N/A
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