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GS_00HRX8M.1
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USA/GS_00HRX8M.1/2026-04-07
D. Dunn &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ428712.1.seg4/PZ428713.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-20 05:12:28 UTC
Date released
2026-05-20 05:13:36 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection subdivision level 1
Kansas
Collection date
2026-04-07
Isolate name
A/swine/Kansas/A03690433/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ428712.1
INSDC accession seg6
PZ428713.1
NCBI release date
2026-05-19
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.8%)
Total ambiguous nucs seg4
2
Total SNPs seg4
116
Length seg6
1410 (97.9%)
Total ambiguous nucs seg6
1
Total SNPs seg6
172
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
G
23
A
T
42
C
A
50
G
G
56
A
C
76
A
C
77
T
A
80
T
T
83
C
G
91
A
C
94
T
G
113
A
A
125
G
A
165
G
A
206
T
C
208
A
G
214
A
G
222
A
T
230
C
Show more
seg6
G
34
A
C
54
T
A
55
C
T
59
G
C
76
T
A
83
G
G
94
A
A
95
C
A
106
G
G
112
A
A
120
G
T
125
C
T
127
C
A
130
T
T
132
G
T
148
A
G
157
A
G
160
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
P
4
H
HA1:
S
9
N
HA1:
T
10
M
HA1:
I
34
V
HA1:
T
48
K
HA1:
G
50
E
HA1:
D
53
N
HA1:
I
58
V
HA1:
K
82
S
HA1:
Y
94
H
HA1:
V
112
I
HA1:
N
121
T
HA1:
D
122
N
HA1:
N
133
Y
HA1:
R
142
G
HA1:
K
158
N
HA1:
F
159
S
HA1:
N
165
E
Show more
HA2
HA2:
I
32
R
HA2:
N
46
D
HA2:
N
116
S
HA2:
R
121
K
HA2:
N
168
S
HA2:
G
181
E
HA2:
R
216
K
NA
NA:
T
16
I
NA:
S
18
A
NA:
I
26
V
NA:
I
30
L
NA:
K
38
R
NA:
Y
40
H
NA:
E
41
D
NA:
F
42
C
NA:
N
47
K
NA:
M
51
I
NA:
L
52
F
NA:
I
62
K
NA:
I
73
V
NA:
N
86
D
NA:
G
93
N
NA:
T
95
A
NA:
L
126
P
NA:
D
127
N
Show more
SigPep
SigPep:
Y
9
H
Deletions
N/A
Insertions
N/A
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