GenSpectrum
Organisms
Influenza A/H1N1pdm
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Influenza A/H1N1pdm
|
Browse data
Select organism section
Browse data
GS_00HRWWB.1
Download
Download FASTA
Download metadata TSV
USA/GS_00HRWWB.1/2026-04-08
D. Dunn &
P. C. Gauger
Iowa State University Veterinary Diagnostic Lab, Bioinformatics
Submission details
Submission ID
PZ428742.1.seg4/PZ428743.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-20 05:12:13 UTC
Date released
2026-05-20 05:13:19 UTC
Clade
Clade HA
D.3.1
Clade NA
D.2
Sample details
Collection country
USA
Collection subdivision level 1
Texas
Collection date
2026-04-08
Isolate name
A/swine/Texas/A03690247/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ428742.1
INSDC accession seg6
PZ428743.1
NCBI release date
2026-05-19
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg4
1701 (97.1%)
Total SNPs seg4
106
Length seg6
1410 (98.4%)
Total SNPs seg6
26
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg4
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
G
205
A
A
231
C
C
281
A
C
293
G
C
318
T
G
322
A
G
360
A
A
407
G
G
409
A
G
416
A
A
429
G
Show more
seg6
A
144
G
G
163
A
G
165
A
C
275
T
C
320
T
C
386
T
C
452
A
T
506
A
C
539
T
G
607
A
C
671
T
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
T
1016
C
C
1061
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
R
45
K
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
R
113
K
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
K
167
E
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
NA
NA:
I
46
V
NA:
S
52
N
NA:
V
53
I
NA:
S
200
N
NA:
I
264
T
NA:
E
432
K
NA:
V
453
M
NA:
K
469
N
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
Load sequences