GenSpectrum
Organisms
Dengue 1
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Dengue 1
|
Browse data
Select organism section
Browse data
GS_00HRBVY.1
Download
Download FASTA
Download metadata TSV
Comoros/GS_00HRBVY.1/2026-01-31
T. Fourie,
R. Klitting,
L. Pezzi,
L. Bosio,
G. Priorkowski,
G. Grard,
G. Durand,
X. de Lamballerie,
N. Traversier,
M.-C. Jaffar,
A. Nazli,
M. Peden,
M. Geulen,
T. Canivez,
G. Piorkowski &
R. Amaral
CNR Arbovirus, CNR Arbovirus
Submission details
Submission ID
PZ385158.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-17 04:58:44 UTC
Date released
2026-05-17 04:59:36 UTC
Clade & Lineage
Clade
1III_A.2
Sample details
Collection country
Comoros
Collection date
2026-01-31
Isolate name
DENV1-85638-3
Host
Host
Homo sapiens
INSDC
INSDC accession
PZ385158.1
NCBI release date
2026-05-16
NCBI update date
2026-05-16
Alignment and QC
Length
10562 (63.9%)
Total deleted nucs
18
Total SNPs
566
Total unknown nucs
3721
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
G
37
A
A
112
G
T
171
G
T
208
C
T
230
A
T
244
C
T
274
C
G
302
A
C
328
T
G
340
A
G
349
A
A
355
G
A
363
G
T
368
C
G
388
A
T
397
C
C
412
T
T
442
C
Show more
Deletions
10296-10302, 10308-10318
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
L
46
M
C:
G
70
S
C:
N
90
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
I
293
T
E:
M
297
V
E:
V
322
M
E:
V
428
M
E:
I
436
V
E:
I
439
V
NS1
NS1:
V
89
I
NS1:
V
93
A
NS1:
S
94
N
NS1:
A
98
T
NS1:
V
128
T
NS1:
N
139
D
NS1:
N
146
D
NS1:
I
162
V
NS1:
V
178
M
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
I
15
V
NS2A:
G
35
A
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
A
64
V
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
A
147
T
NS2A:
V
155
I
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
I
171
V
NS2A:
I
174
V
NS2A:
L
199
F
NS2B
NS2B:
V
11
I
NS3
NS3:
A
91
T
NS3:
A
112
T
NS3:
R
185
K
NS3:
V
221
I
NS4A
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
A
93
V
NS4B
NS4B:
A
18
V
NS4B:
A
19
V
NS4B:
A
27
T
NS4B:
V
31
I
NS5
NS5:
V
270
I
NS5:
E
559
Q
NS5:
N
585
S
NS5:
A
616
V
NS5:
T
635
N
NS5:
P
636
S
NS5:
V
642
A
NS5:
K
647
E
NS5:
T
651
V
NS5:
I
669
T
NS5:
F
881
Y
prM
prM:
S
15
T
Deletions
N/A
Insertions
N/A
Load sequences