GS_00HR6QD.1

USA/GS_00HR6QD.1/2026-04-23
A. Rothstein, G. Muir, A. Sum, A. Simas, B. Lu, B. Girinathan, H. Mammadova, P. Leeson & D. Gratalo

Ginkgo Biosecurity

Submission details

Submission ID
PZ392834.1.seg4/PZ392836.1.seg5/PZ392835.1.seg6/PZ392837.1.seg8
Submitting group
Date submitted
2026-05-14 05:16:32 UTC
Date released
2026-05-14 05:17:08 UTC

INSDC

bioprojectAccession
INSDC accession seg4
INSDC accession seg5
INSDC accession seg6
INSDC accession seg8
NCBI release date
2026-05-12

Clade

Clade HA
V1A.3a.2
Clade NA
B.7.1

Sample details

Collection country
USA
Collection subdivision level 1
New York
Collection date
2026-04-23
Isolate name
B/New York/GKISBBBJ30473/2026

Host

Host

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg4
1860 (99.2%)
Total deleted nucs seg4
9
Total SNPs seg4
55
Length seg5
1831 (100%)
Total inserted nucs seg5
81
Total SNPs seg5
34
Length seg6
1528 (100%)
Total inserted nucs seg6
127
Total SNPs seg6
34
Length seg8
1083 (99.6%)
Total inserted nucs seg8
21
Total SNPs seg8
22

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg4

  • A10G
  • G144A
  • T159C
  • C252A
  • C270T
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T

seg5

  • C3T
  • T46C
  • C178T
  • A224G
  • A235G
  • T298C
  • C313T
  • G361A
  • A373G
  • C380T
  • A454G
  • C523T
  • C608T
  • A634G
  • A724G
  • T742C
  • A763G
  • A829G

seg6

  • T9C
  • C125A
  • C152T
  • T155C
  • T212C
  • C318A
  • A358G
  • C394T
  • C399T
  • C429T
  • A504G
  • C519T
  • A557G
  • A660C
  • T714A
  • C849T
  • T879C
  • T885G

seg8

  • G26A
  • G37A
  • A118G
  • T163C
  • G190A
  • T341C
  • A352C
  • T391C
  • T400C
  • C419T
  • A426G
  • C604T
  • A610T
  • C632T
  • G661A
  • G685A
  • T775C
  • C882T
Deletions

seg4

562-570
Insertions

seg5

ins_0:GCATTTTCTTGTAAACTCCA, ins_1750:CGTTTGGAATATGGGTGTTTATTCTCATTAAAATAAATATAAAAAATGCTGTTGTTTCTAC

seg6

ins_0:ATCTTCTCAAAACTGAAGCAAATAGGCCAAAAATGAACA, ins_1401:TGGGGGAGTGGTTAAGTCTGTTCTAAACCCTTTGTTCCTATTTTATTTGAACAATTGTCCTTACTAAACTTAATTGTTTCTGAAAAAT

seg8

ins_1066:TAAAAATCCTCTTGTTACTAC

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

NA

  • NA:P42Q
  • NA:P51L
  • NA:L52S
  • NA:V71A
  • NA:I120V
  • NA:K186R
  • NA:K220N
  • NA:S295R
  • NA:N340D
  • NA:K343E
  • NA:E358K
  • NA:G378E
  • NA:D384G
  • NA:A395I
  • NA:V401I

NEP

  • NEP:L30S
  • NEP:S93P
  • NEP:V115I

NP

  • NP:T66A
  • NP:V453A

NS1

  • NS1:Y104H
  • NS1:K107N
  • NS1:L130F
  • NS1:D132G
  • NS1:H201Y
Deletions

HA1

HA1:162-164
Insertions
N/A