GenSpectrum
Organisms
Influenza A/H3N2
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Influenza A/H3N2
|
Browse data
Select organism section
Browse data
GS_00HR3Y0.1
Download
Download FASTA
Download metadata TSV
USA/GS_00HR3Y0.1/2026-03-24
A. USDA Swine Influenza Surveillance &
M. Sturos
USDA
Submission details
Submission ID
PZ383874.1.seg4/PZ383875.1.seg6
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-09 05:16:25 UTC
Date released
2026-05-09 05:17:04 UTC
Clade
Clade HA
unassigned
Clade NA
None
Sample details
Collection country
USA
Collection date
2026-03-24
Isolate name
A/swine/Minnesota/A02980801/2026
Host
Host
Sus scrofa
INSDC
INSDC accession seg4
PZ383874.1
INSDC accession seg6
PZ383875.1
NCBI release date
2026-05-08
INSDC seg4
subtype_seg4
H3
INSDC seg6
subtype_seg6
N2
Alignment and QC
Length seg4
1701 (97.9%)
Total ambiguous nucs seg4
1
Total SNPs seg4
209
Length seg6
1410 (97.8%)
Total ambiguous nucs seg6
2
Total SNPs seg6
182
Nucleotide mutations
Mutations called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
seg4
G
38
T
A
43
G
G
57
A
T
60
A
T
61
A
T
65
C
A
82
G
C
94
T
G
101
A
C
107
T
C
108
T
T
110
G
G
113
A
A
125
G
G
137
A
A
138
T
G
155
A
A
156
G
Show more
seg6
T
19
C
C
20
A
G
25
A
G
34
A
A
53
G
A
55
C
A
56
C
T
59
G
T
74
C
C
76
T
C
91
T
A
95
G
A
97
G
T
110
C
T
125
C
T
127
C
G
128
A
A
130
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_007373.1
,
NC_007372.1
,
NC_007371.1
,
CY163680.1
,
NC_007369.1
,
CY114383.1
,
NC_007367.1
&
NC_007370.1
references
Substitutions
HA1
HA1:
N
6
S
HA1:
T
10
M
HA1:
I
25
L
HA1:
N
31
D
HA1:
S
46
F
HA1:
G
50
R
HA1:
D
53
N
HA1:
I
58
V
HA1:
E
62
K
HA1:
Q
75
H
HA1:
G
78
D
HA1:
K
92
T
HA1:
N
96
S
HA1:
D
101
Y
HA1:
Y
105
H
HA1:
S
107
T
HA1:
T
117
N
HA1:
N
121
T
Show more
HA2
HA2:
S
29
Y
HA2:
I
32
T
HA2:
N
49
T
HA2:
L
55
V
HA2:
G
57
K
HA2:
F
119
Y
HA2:
K
123
R
HA2:
K
124
R
HA2:
D
164
N
HA2:
I
173
V
HA2:
E
177
Q
HA2:
F
196
L
HA2:
A
201
V
NA
NA:
Q
5
K
NA:
T
16
A
NA:
I
17
L
NA:
S
18
A
NA:
F
23
L
NA:
I
30
V
NA:
Y
40
H
NA:
E
41
N
NA:
F
42
S
NA:
N
43
D
NA:
P
45
S
NA:
M
51
I
NA:
L
52
F
NA:
I
62
K
NA:
I
73
V
NA:
K
75
R
NA:
N
86
I
NA:
G
93
N
Show more
SigPep
SigPep:
L
7
F
SigPep:
Y
9
C
SigPep:
V
14
I
SigPep:
F
15
N
Deletions
N/A
Insertions
N/A
Load sequences