GS_00HR3D5.1

USA/GS_00HR3D5.1/2026-04-08
A. USDA Swine Influenza Surveillance & M. Sturos

USDA

Submission details

Submission ID
PZ383894.1.seg4/PZ383895.1.seg6
Submitting group
Date submitted
2026-05-09 05:13:21 UTC
Date released
2026-05-09 05:14:04 UTC

Clade

Clade HA
D
Clade NA
C.5.1.1

Sample details

Collection country
USA
Collection date
2026-04-08
Isolate name
A/swine/Minnesota/A02980802/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-05-08

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg4
1701 (96.9%)
Total ambiguous nucs seg4
3
Total SNPs seg4
114
Length seg6
1410 (98.4%)
Total SNPs seg6
27

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg4

  • C42A
  • A47G
  • T56C
  • G57A
  • A60G
  • A119G
  • T161C
  • C164T
  • G188A
  • A231C
  • T236C
  • C248T
  • C255T
  • C293A
  • T294G
  • C318T
  • G322A
  • A335G

seg6

  • C47T
  • A156G
  • G165A
  • C223T
  • C275T
  • T335C
  • T353C
  • C452A
  • C773T
  • A785G
  • A818G
  • C893T
  • G905T
  • G914T
  • G1025A
  • G1153A
  • A1164G
  • C1187T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:K54Q
  • HA1:S74R
  • HA1:S75A
  • HA1:P83S
  • HA1:S84N
  • HA1:D97N
  • HA1:N125D
  • HA1:N129D
  • HA1:P137S
  • HA1:N156Q
  • HA1:L161I
  • HA1:S162N
  • HA1:K163Q
  • HA1:S164T
  • HA1:S183P
  • HA1:S185M
  • HA1:A186T
  • HA1:Q189E

HA2

  • HA2:E29D
  • HA2:I45V
  • HA2:E47K
  • HA2:I91V
  • HA2:K116E
  • HA2:S124H
  • HA2:E172K
  • HA2:E179D

NA

  • NA:N50D
  • NA:V53I
  • NA:T72I
  • NA:G382E
  • NA:K386E
  • NA:E432K
  • NA:V453M
  • NA:K469N

SigPep

  • SigPep:L8M
  • SigPep:A13T
  • SigPep:T14A
Deletions
N/A
Insertions
N/A