GenSpectrum
Organisms
Influenza A/H1N1pdm
GenSpectrum
Organisms
Influenza B/Victoria
Dengue 1
Dengue 2
Dengue 3
Dengue 4
Influenza A/H1N1pdm
Influenza A/H3N2
Influenza A/H5N1
Influenza A
Influenza B
Docs
API docs
Influenza A/H1N1pdm
|
Browse data
Select organism section
Browse data
GS_00HR3AB.1
Download
Download FASTA
Download metadata TSV
Germany/GS_00HR3AB.1/2026-02-24
P. A. Mandujano,
R. T. Kevorkian &
M. G. Koenig
United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing
Submission details
Submission ID
PZ381370.1.seg1/PZ381346.1.seg3/PZ381259.1.seg4/PZ381314.1.seg5/PZ381296.1.seg6/PZ381278.1.seg7/PZ381332.1.seg8
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-09 05:13:21 UTC
Date released
2026-05-09 05:14:04 UTC
Clade
Clade HA
D.3.1
Clade NA
D.2
Sample details
Collection country
Germany
Collection subdivision level 1
Rheinland-Pfalz
Collection date
2026-02-24
Isolate name
A/Rheinland-Pfalz/LRMC_0160/2026
Host
Host
Homo sapiens
INSDC
INSDC accession seg1
PZ381370.1
INSDC accession seg3
PZ381346.1
INSDC accession seg4
PZ381259.1
INSDC accession seg5
PZ381314.1
INSDC accession seg6
PZ381296.1
INSDC accession seg7
PZ381278.1
INSDC accession seg8
PZ381332.1
NCBI release date
2026-05-08
INSDC seg4
subtype_seg4
H1
INSDC seg6
subtype_seg6
N1
Alignment and QC
Length seg1
2280 (100%)
Total SNPs seg1
86
Length seg3
2151 (100%)
Total SNPs seg3
86
Length seg4
1701 (97.1%)
Total SNPs seg4
109
Length seg5
1497 (100%)
Total SNPs seg5
60
Length seg6
1410 (98.4%)
Total SNPs seg6
22
Length seg7
982 (100%)
Total SNPs seg7
24
Length seg8
863 (100%)
Total SNPs seg8
35
Nucleotide mutations
Mutations called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
seg1
A
18
G
A
90
C
A
96
G
A
108
G
A
132
G
A
138
G
G
161
A
A
174
G
G
198
A
T
201
C
A
225
G
C
242
T
A
243
G
C
285
A
A
291
G
C
309
T
T
336
A
G
375
A
Show more
seg3
C
16
A
G
40
A
R
53
A
T
81
C
G
84
C
A
88
G
C
90
T
C
99
T
A
114
T
G
126
A
C
153
T
C
162
T
C
165
T
G
187
A
G
204
A
G
298
A
G
423
A
G
477
A
Show more
seg4
C
42
A
A
47
G
G
57
A
A
119
G
T
161
C
C
164
T
G
188
A
A
212
G
A
231
C
C
293
G
C
318
T
G
322
A
G
360
A
A
408
C
G
416
A
A
429
G
C
443
T
A
456
G
Show more
seg5
A
33
G
G
42
T
C
87
T
A
97
G
C
141
A
C
171
T
T
177
C
C
180
T
C
249
A
A
288
C
G
298
A
G
309
A
T
314
C
G
315
A
R
341
A
T
365
A
A
390
G
T
402
C
Show more
seg6
T
50
C
A
144
G
G
163
A
T
188
C
C
284
T
C
452
A
G
607
A
A
785
G
T
799
C
A
818
G
C
893
T
G
914
T
G
1001
A
T
1016
C
A
1049
G
G
1097
A
A
1177
G
C
1187
T
Show more
seg7
G
75
A
C
124
A
G
238
A
G
258
A
A
293
G
G
306
A
G
339
A
C
375
A
T
432
C
G
441
T
G
492
A
C
507
A
G
600
A
C
622
A
G
660
A
T
663
C
G
687
A
A
689
G
Show more
seg8
C
6
A
C
42
T
C
54
T
C
57
T
T
99
C
C
108
A
T
150
A
C
153
T
T
159
C
G
163
A
C
192
T
C
204
T
A
238
G
G
250
A
C
264
T
C
268
A
C
315
T
G
363
A
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_026438.1
,
NC_026435.1
,
NC_026437.1
,
CY121680.1
,
NC_026436.1
,
MW626056.1
,
NC_026431.1
&
NC_026432.1
references
Substitutions
HA1
HA1:
K
54
Q
HA1:
S
74
R
HA1:
P
83
S
HA1:
S
84
N
HA1:
D
97
N
HA1:
T
120
A
HA1:
N
129
D
HA1:
K
130
N
HA1:
P
137
S
HA1:
K
142
R
HA1:
N
156
K
HA1:
L
161
I
HA1:
S
162
N
HA1:
K
163
Q
HA1:
S
164
T
HA1:
S
183
P
HA1:
S
185
I
HA1:
A
186
T
Show more
HA2
HA2:
E
29
D
HA2:
I
45
V
HA2:
E
47
K
HA2:
I
91
V
HA2:
S
124
H
HA2:
I
133
T
HA2:
E
172
K
HA2:
E
179
D
HA2:
V
193
A
M1
M1:
L
42
I
M1:
V
80
I
M1:
K
98
R
M1:
Q
208
K
M1:
K
230
R
M2
M2:
D
21
G
M2:
S
23
N
NA
NA:
I
46
V
NA:
S
52
N
NA:
S
200
N
NA:
I
264
T
NA:
K
390
R
NA:
V
453
M
NA:
K
469
N
NEP
NEP:
D
2
E
NEP:
N
29
S
NEP:
M
83
I
NP
NP:
E
14
D
NP:
I
33
V
NP:
V
100
I
NP:
M
105
T
NP:
X
114
E
NP:
L
122
Q
NP:
I
136
L
NP:
V
217
I
NP:
N
377
S
NP:
V
425
I
NP:
S
498
N
NS1
NS1:
D
2
E
NS1:
E
55
K
NS1:
T
80
A
NS1:
V
84
I
NS1:
L
90
I
NS1:
I
123
V
NS1:
E
125
D
NS1:
K
131
E
NS1:
A
155
T
PA
PA:
V
14
I
PA:
X
18
E
PA:
I
30
V
PA:
V
63
I
PA:
V
100
I
PA:
P
224
S
PA:
S
225
C
PA:
R
262
K
PA:
N
321
K
PA:
I
330
V
PA:
A
337
T
PA:
K
339
N
PA:
R
362
K
PA:
I
438
V
PA:
I
505
V
PA-X
PA-X:
V
14
I
PA-X:
X
18
E
PA-X:
I
30
V
PA-X:
V
63
I
PA-X:
V
100
I
PA-X:
R
199
K
PA-X:
L
201
S
PA-X:
N
204
S
PA-X:
R
206
K
PA-X:
R
221
Q
PA-X:
L
229
S
PB2
PB2:
R
54
K
PB2:
M
66
I
PB2:
T
81
M
PB2:
D
195
N
PB2:
G
225
S
PB2:
R
293
K
PB2:
R
299
K
PB2:
V
344
M
PB2:
I
354
L
PB2:
S
453
T
PB2:
L
475
M
PB2:
T
524
A
PB2:
V
667
I
PB2:
V
731
I
SigPep
SigPep:
L
8
M
SigPep:
A
13
T
Deletions
N/A
Insertions
N/A
Load sequences