GS_00HQRHA.1

USA/GS_00HQRHA.1/2026-03-16
W. H. Clore & P. C. Gauger

Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Submission details

Submission ID
PZ370922.1.seg4/PZ370923.1.seg6
Submitting group
Date submitted
2026-05-08 05:08:57 UTC
Date released
2026-05-08 05:09:36 UTC

Clade

Clade HA
unassigned

Sample details

Collection country
USA
Collection subdivision level 1
Iowa
Collection date
2026-03-16
Isolate name
A/swine/Iowa/A02758935/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-05-06

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg4
1701 (97.1%)
Total SNPs seg4
184

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg4

  • T41C
  • T50C
  • G57A
  • C62A
  • T68A
  • A71C
  • T92C
  • G98A
  • A107G
  • A110T
  • T116C
  • A131G
  • A134G
  • T140C
  • T161C
  • T167A
  • G174A
  • A178G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:D35N
  • HA1:K36R
  • HA1:N56S
  • HA1:I61L
  • HA1:S69T
  • HA1:S74R
  • HA1:P83S
  • HA1:S84K
  • HA1:D86E
  • HA1:D97N
  • HA1:T120A
  • HA1:S128T
  • HA1:K130R
  • HA1:A141T
  • HA1:K142N
  • HA1:K146R
  • HA1:I149V
  • HA1:K153Q

HA2

  • HA2:V18I
  • HA2:N43I
  • HA2:E47G
  • HA2:N71S
  • HA2:K75R
  • HA2:N146D
  • HA2:T147M
  • HA2:L197F
  • HA2:S212F

SigPep

  • SigPep:A13T
  • SigPep:N16K
Deletions
N/A
Insertions
N/A