GS_00HQRFF.1

USA/GS_00HQRFF.1/2026-03-17
W. H. Clore & P. C. Gauger

Iowa State University Veterinary Diagnostic Lab, Bioinformatics

Submission details

Submission ID
PZ370908.1.seg4/PZ370909.1.seg6
Submitting group
Date submitted
2026-05-08 05:08:57 UTC
Date released
2026-05-08 05:09:36 UTC

Clade

Clade HA
unassigned

Sample details

Collection country
USA
Collection subdivision level 1
South_Dakota
Collection date
2026-03-17
Isolate name
A/swine/South_Dakota/A02758927/2026

Host

Host

INSDC

INSDC accession seg4
INSDC accession seg6
NCBI release date
2026-05-06

INSDC seg4

subtype_seg4
H1

INSDC seg6

subtype_seg6
N1

Alignment and QC

Length seg4
1695 (97.1%)
Total deleted nucs seg4
6
Total SNPs seg4
278

Nucleotide mutations

Mutations called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

seg4

  • C33T
  • A35G
  • G36T
  • A38G
  • T41C
  • C42T
  • T48C
  • T54C
  • C62T
  • T78A
  • A110T
  • C113T
  • A119T
  • C122T
  • A128G
  • C129T
  • A134G
  • T161C
Deletions

seg4

444-449
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_026438.1, NC_026435.1, NC_026437.1, CY121680.1, NC_026436.1, MW626056.1, NC_026431.1 & NC_026432.1 references

Substitutions

HA1

  • HA1:L3I
  • HA1:R45G
  • HA1:V47K
  • HA1:A48S
  • HA1:H51Y
  • HA1:I61L
  • HA1:L70I
  • HA1:S71L
  • HA1:A73V
  • HA1:P83S
  • HA1:D94S
  • HA1:I96T
  • HA1:D97N
  • HA1:R113K
  • HA1:K119I
  • HA1:T120E
  • HA1:S122P
  • HA1:S128Y

HA2

  • HA2:E29D
  • HA2:L38Q
  • HA2:N43R
  • HA2:E47G
  • HA2:V55I
  • HA2:I56V
  • HA2:H72N
  • HA2:K75R
  • HA2:K82R
  • HA2:I91V
  • HA2:Y110F
  • HA2:S124N
  • HA2:K127R
  • HA2:D158N
  • HA2:P160L
  • HA2:A166S
  • HA2:E179D
  • HA2:Y184H
  • HA2:V200L

SigPep

  • SigPep:V6L
  • SigPep:Y10H
  • SigPep:F12L
Deletions

HA1

HA1:125, HA1:126
Insertions
N/A