GS_00HQQ44.1

USA/GS_00HQQ44.1/2026-04-15
W. E. Gruner, V. S. Hogan, D. M. Muehleman, A. C. Fries, J. F. Hanson, D. L. Kramer, L. S. Demarcus, P. M. Wasik, E. A. Macias, J. M. Garcia, C. A. Smetana & T. R. Hartless

United States Air Force School of Aerospace Medicine Public Health Submission Group, 711th Human Performance Wing

Submission details

Submission ID
PZ367855.1.seg3/PZ367842.1.seg4
Submitting group
Date submitted
2026-05-06 05:03:51 UTC
Date released
2026-05-06 05:04:26 UTC

Clade

Clade HA
V1A.3a.2

Sample details

Collection country
USA
Collection subdivision level 1
Washington
Collection date
2026-04-15
Isolate name
B/Washington/USAFSAM-17462/2026

Host

Host

INSDC

INSDC accession seg3
INSDC accession seg4
NCBI release date
2026-05-05

INSDC seg4

lineage_seg4
vic

Alignment and QC

Length seg3
2181 (97.1%)
Total SNPs seg3
44
Length seg4
1749 (93.3%)
Total deleted nucs seg4
9
Total SNPs seg4
49

Nucleotide mutations

Mutations called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

seg3

  • T111C
  • C117T
  • C273T
  • T339C
  • G414A
  • T423C
  • G549A
  • A618G
  • T654C
  • A771G
  • C813T
  • G867A
  • G888A
  • C897T
  • A935G
  • G936A
  • A987G
  • C1006T

seg4

  • T159C
  • C252A
  • C270T
  • A273G
  • G297A
  • G312T
  • A318G
  • C375T
  • C378T
  • A427G
  • C441T
  • T444C
  • C453T
  • G457A
  • G460A
  • A463G
  • A484G
  • C509T
Deletions

seg4

562-570
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the CY115157.1, CY115158.1, CY115156.1, KX058884.1, CY115154.1, CY073894.1, CY115152.1 & CY115155.1 references

Substitutions

HA1

  • HA1:I117V
  • HA1:A127T
  • HA1:E128K
  • HA1:N129D
  • HA1:K136E
  • HA1:P144L
  • HA1:N150K
  • HA1:A154E
  • HA1:M156V
  • HA1:E183K
  • HA1:G184E
  • HA1:A199T
  • HA1:K203R
  • HA1:R279K

PA

  • PA:K312R
  • PA:T352A
  • PA:Y458F
  • PA:S530T
  • PA:S547G
  • PA:F709I
  • PA:N714S
Deletions

HA1

HA1:162-164
Insertions
N/A